398 related articles for article (PubMed ID: 25303887)
1. A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: application to Arabidopsis.
Shamloo-Dashtpagerdi R; Razi H; Aliakbari M; Lindlöf A; Ebrahimi M; Ebrahimie E
J Theor Biol; 2015 Jan; 364():364-76. PubMed ID: 25303887
[TBL] [Abstract][Full Text] [Related]
2. A universal algorithm for genome-wide in silicio identification of biologically significant gene promoter putative cis-regulatory-elements; identification of new elements for reactive oxygen species and sucrose signaling in Arabidopsis.
Geisler M; Kleczkowski LA; Karpinski S
Plant J; 2006 Feb; 45(3):384-98. PubMed ID: 16412085
[TBL] [Abstract][Full Text] [Related]
3. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
Niu M; Tabari ES; Su Z
BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
[TBL] [Abstract][Full Text] [Related]
4. Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.
Berendzen KW; Stüber K; Harter K; Wanke D
BMC Bioinformatics; 2006 Nov; 7():522. PubMed ID: 17137509
[TBL] [Abstract][Full Text] [Related]
5. Genome wide analysis of Arabidopsis core promoters.
Molina C; Grotewold E
BMC Genomics; 2005 Feb; 6():25. PubMed ID: 15733318
[TBL] [Abstract][Full Text] [Related]
6. Arabidopsis thaliana regulatory element analyzer.
Choudhury A; Lahiri A
Bioinformatics; 2008 Oct; 24(19):2263-4. PubMed ID: 18694893
[TBL] [Abstract][Full Text] [Related]
7. Identification of plant promoter constituents by analysis of local distribution of short sequences.
Yamamoto YY; Ichida H; Matsui M; Obokata J; Sakurai T; Satou M; Seki M; Shinozaki K; Abe T
BMC Genomics; 2007 Mar; 8():67. PubMed ID: 17346352
[TBL] [Abstract][Full Text] [Related]
8. Computational exploration of cis-regulatory modules in rhythmic expression data using the "Exploration of Distinctive CREs and CRMs" (EDCC) and "CRM Network Generator" (CNG) programs.
Bekiaris PS; Tekath T; Staiger D; Danisman S
PLoS One; 2018; 13(1):e0190421. PubMed ID: 29298348
[TBL] [Abstract][Full Text] [Related]
9. Genome-wide analysis of cis-regulatory element structure and discovery of motif-driven gene co-expression networks in grapevine.
Wong DCJ; Lopez Gutierrez R; Gambetta GA; Castellarin SD
DNA Res; 2017 Jun; 24(3):311-326. PubMed ID: 28119334
[TBL] [Abstract][Full Text] [Related]
10. Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics.
Vandepoele K; Casneuf T; Van de Peer Y
Genome Biol; 2006; 7(11):R103. PubMed ID: 17090307
[TBL] [Abstract][Full Text] [Related]
11. Deciphering Cis-Regulatory Element Mediated Combinatorial Regulation in Rice under Blast Infected Condition.
Deb A; Kundu S
PLoS One; 2015; 10(9):e0137295. PubMed ID: 26327607
[TBL] [Abstract][Full Text] [Related]
12. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
Davuluri RV; Sun H; Palaniswamy SK; Matthews N; Molina C; Kurtz M; Grotewold E
BMC Bioinformatics; 2003 Jun; 4():25. PubMed ID: 12820902
[TBL] [Abstract][Full Text] [Related]
13. Bioinformatic Identification of Conserved Cis-Sequences in Coregulated Genes.
Bülow L; Hehl R
Methods Mol Biol; 2016; 1482():233-45. PubMed ID: 27557771
[TBL] [Abstract][Full Text] [Related]
14. Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana.
El Amrani A; Marie L; Aïnouche A; Nicolas J; Couée I
Mol Genet Genomics; 2002 Jun; 267(4):459-71. PubMed ID: 12111553
[TBL] [Abstract][Full Text] [Related]
15. Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.
Hosseinpour B; Bakhtiarizadeh MR; Khosravi P; Ebrahimie E
Gene; 2013 Dec; 531(2):212-9. PubMed ID: 24042128
[TBL] [Abstract][Full Text] [Related]
16. In silico analysis of cis-acting regulatory elements in 5' regulatory regions of sucrose transporter gene families in rice (Oryza sativa Japonica) and Arabidopsis thaliana.
Ibraheem O; Botha CE; Bradley G
Comput Biol Chem; 2010 Dec; 34(5-6):268-83. PubMed ID: 21036669
[TBL] [Abstract][Full Text] [Related]
17. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
Kim SY; Kim Y
BMC Bioinformatics; 2006 Jul; 7():330. PubMed ID: 16817975
[TBL] [Abstract][Full Text] [Related]
18. Combinatorial Cis-regulation in Saccharomyces Species.
Spivak AT; Stormo GD
G3 (Bethesda); 2016 Jan; 6(3):653-67. PubMed ID: 26772747
[TBL] [Abstract][Full Text] [Related]
19. In planta analysis of a cis-regulatory cytokinin response motif in Arabidopsis and identification of a novel enhancer sequence.
Ramireddy E; Brenner WG; Pfeifer A; Heyl A; Schmülling T
Plant Cell Physiol; 2013 Jul; 54(7):1079-92. PubMed ID: 23620480
[TBL] [Abstract][Full Text] [Related]
20. Systematic prediction of cis-regulatory elements in the Chlamydomonas reinhardtii genome using comparative genomics.
Ding J; Li X; Hu H
Plant Physiol; 2012 Oct; 160(2):613-23. PubMed ID: 22915576
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]