257 related articles for article (PubMed ID: 25313048)
1. Protein-DNA binding in the absence of specific base-pair recognition.
Afek A; Schipper JL; Horton J; Gordân R; Lukatsky DB
Proc Natl Acad Sci U S A; 2014 Dec; 111(48):17140-5. PubMed ID: 25313048
[TBL] [Abstract][Full Text] [Related]
2. Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.
Afek A; Cohen H; Barber-Zucker S; Gordân R; Lukatsky DB
PLoS Comput Biol; 2015 Aug; 11(8):e1004429. PubMed ID: 26285121
[TBL] [Abstract][Full Text] [Related]
3. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
Oliver P; Peralta-Gil M; Tabche ML; Merino E
BMC Genomics; 2016 Aug; 17(1):686. PubMed ID: 27567672
[TBL] [Abstract][Full Text] [Related]
4. Structural basis of RXR-DNA interactions.
Zhao Q; Chasse SA; Devarakonda S; Sierk ML; Ahvazi B; Rastinejad F
J Mol Biol; 2000 Feb; 296(2):509-20. PubMed ID: 10669605
[TBL] [Abstract][Full Text] [Related]
5. New perch for the winged helix.
Wolberger C; Campbell R
Nat Struct Biol; 2000 Apr; 7(4):261-2. PubMed ID: 10742162
[No Abstract] [Full Text] [Related]
6. Quantitative modeling of transcription factor binding specificities using DNA shape.
Zhou T; Shen N; Yang L; Abe N; Horton J; Mann RS; Bussemaker HJ; Gordân R; Rohs R
Proc Natl Acad Sci U S A; 2015 Apr; 112(15):4654-9. PubMed ID: 25775564
[TBL] [Abstract][Full Text] [Related]
7. Signals for TBP/TATA box recognition.
Bareket-Samish A; Cohen I; Haran TE
J Mol Biol; 2000 Jun; 299(4):965-77. PubMed ID: 10843851
[TBL] [Abstract][Full Text] [Related]
8. DNA-dependent formation of transcription factor pairs alters their binding specificity.
Jolma A; Yin Y; Nitta KR; Dave K; Popov A; Taipale M; Enge M; Kivioja T; Morgunova E; Taipale J
Nature; 2015 Nov; 527(7578):384-8. PubMed ID: 26550823
[TBL] [Abstract][Full Text] [Related]
9. GntR Family of Bacterial Transcription Factors and Their DNA Binding Motifs: Structure, Positioning and Co-Evolution.
Suvorova IA; Korostelev YD; Gelfand MS
PLoS One; 2015; 10(7):e0132618. PubMed ID: 26151451
[TBL] [Abstract][Full Text] [Related]
10. Crystal structure of an IRF-DNA complex reveals novel DNA recognition and cooperative binding to a tandem repeat of core sequences.
Fujii Y; Shimizu T; Kusumoto M; Kyogoku Y; Taniguchi T; Hakoshima T
EMBO J; 1999 Sep; 18(18):5028-41. PubMed ID: 10487755
[TBL] [Abstract][Full Text] [Related]
11. From transcription factors to designed sequence-specific DNA-binding peptides.
Vázquez ME; Caamaño AM; Mascareñas JL
Chem Soc Rev; 2003 Nov; 32(6):338-49. PubMed ID: 14671789
[TBL] [Abstract][Full Text] [Related]
12. Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein.
Fujikawa N; Kurumizaka H; Nureki O; Tanaka Y; Yamazoe M; Hiraga S; Yokoyama S
Nucleic Acids Res; 2004; 32(1):82-92. PubMed ID: 14704346
[TBL] [Abstract][Full Text] [Related]
13. Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.
Miller JC; Pabo CO
J Mol Biol; 2001 Oct; 313(2):309-15. PubMed ID: 11800559
[TBL] [Abstract][Full Text] [Related]
14. Discovering approximate-associated sequence patterns for protein-DNA interactions.
Chan TM; Wong KC; Lee KH; Wong MH; Lau CK; Tsui SK; Leung KS
Bioinformatics; 2011 Feb; 27(4):471-8. PubMed ID: 21193520
[TBL] [Abstract][Full Text] [Related]
15. Transcription factor-DNA binding: beyond binding site motifs.
Inukai S; Kock KH; Bulyk ML
Curr Opin Genet Dev; 2017 Apr; 43():110-119. PubMed ID: 28359978
[TBL] [Abstract][Full Text] [Related]
16. Bispecific Forkhead Transcription Factor FoxN3 Recognizes Two Distinct Motifs with Different DNA Shapes.
Rogers JM; Waters CT; Seegar TCM; Jarrett SM; Hallworth AN; Blacklow SC; Bulyk ML
Mol Cell; 2019 Apr; 74(2):245-253.e6. PubMed ID: 30826165
[TBL] [Abstract][Full Text] [Related]
17. Sequence-dependent sliding kinetics of p53.
Leith JS; Tafvizi A; Huang F; Uspal WE; Doyle PS; Fersht AR; Mirny LA; van Oijen AM
Proc Natl Acad Sci U S A; 2012 Oct; 109(41):16552-7. PubMed ID: 23012405
[TBL] [Abstract][Full Text] [Related]
18. A structural analysis of DNA binding by myelin transcription factor 1 double zinc fingers.
Gamsjaeger R; O'Connell MR; Cubeddu L; Shepherd NE; Lowry JA; Kwan AH; Vandevenne M; Swanton MK; Matthews JM; Mackay JP
J Biol Chem; 2013 Dec; 288(49):35180-91. PubMed ID: 24097990
[TBL] [Abstract][Full Text] [Related]
19. Towards an understanding of protein-DNA recognition.
Rhodes D; Schwabe JW; Chapman L; Fairall L
Philos Trans R Soc Lond B Biol Sci; 1996 Apr; 351(1339):501-9. PubMed ID: 8735272
[TBL] [Abstract][Full Text] [Related]
20. The cocrystal structures of two zinc-stabilized DNA-binding domains illustrate different ways of achieving sequence-specific DNA recognition.
Schwabe JW; Fairall L; Chapman L; Finch JT; Dutnall RN; Rhodes D
Cold Spring Harb Symp Quant Biol; 1993; 58():141-7. PubMed ID: 7956024
[No Abstract] [Full Text] [Related]
[Next] [New Search]
