283 related articles for article (PubMed ID: 25323333)
21. Secondary structure models of the 3' untranslated regions of diverse R2 RNAs.
Ruschak AM; Mathews DH; Bibillo A; Spinelli SL; Childs JL; Eickbush TH; Turner DH
RNA; 2004 Jun; 10(6):978-87. PubMed ID: 15146081
[TBL] [Abstract][Full Text] [Related]
22. Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach.
Algama M; Tasker E; Williams C; Parslow AC; Bryson-Richardson RJ; Keith JM
BMC Genomics; 2017 Mar; 18(1):259. PubMed ID: 28347272
[TBL] [Abstract][Full Text] [Related]
23. Structural imprints in vivo decode RNA regulatory mechanisms.
Spitale RC; Flynn RA; Zhang QC; Crisalli P; Lee B; Jung JW; Kuchelmeister HY; Batista PJ; Torre EA; Kool ET; Chang HY
Nature; 2015 Mar; 519(7544):486-90. PubMed ID: 25799993
[TBL] [Abstract][Full Text] [Related]
24. RNA Secondary Structure Study by Chemical Probing Methods Using DMS and CMCT.
Alghoul F; Eriani G; Martin F
Methods Mol Biol; 2021; 2300():241-250. PubMed ID: 33792883
[TBL] [Abstract][Full Text] [Related]
25. More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cells.
Araki R; Fukumura R; Sasaki N; Kasama Y; Suzuki N; Takahashi H; Tabata Y; Saito T; Abe M
Stem Cells; 2006 Nov; 24(11):2522-8. PubMed ID: 16825609
[TBL] [Abstract][Full Text] [Related]
26. Non-coding RNA profiling of the developing murine lens.
Khan SY; Hackett SF; Riazuddin SA
Exp Eye Res; 2016 Apr; 145():347-351. PubMed ID: 26808486
[TBL] [Abstract][Full Text] [Related]
27. Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs.
Kumagai Y; Vandenbon A; Teraguchi S; Akira S; Suzuki Y
BMC Genomics; 2016 Dec; 17(Suppl 13):1032. PubMed ID: 28155712
[TBL] [Abstract][Full Text] [Related]
28. Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana.
Qu G; Kruszka K; Plewka P; Yang SY; Chiou TJ; Jarmolowski A; Szweykowska-Kulinska Z; Echeverria M; Karlowski WM
BMC Genomics; 2015 Nov; 16():1009. PubMed ID: 26607788
[TBL] [Abstract][Full Text] [Related]
29. Digital transcriptome profiling from attomole-level RNA samples.
Ozsolak F; Goren A; Gymrek M; Guttman M; Regev A; Bernstein BE; Milos PM
Genome Res; 2010 Apr; 20(4):519-25. PubMed ID: 20133332
[TBL] [Abstract][Full Text] [Related]
30. Structure-based whole-genome realignment reveals many novel noncoding RNAs.
Will S; Yu M; Berger B
Genome Res; 2013 Jun; 23(6):1018-27. PubMed ID: 23296921
[TBL] [Abstract][Full Text] [Related]
31. Dawn of the in vivo RNA structurome and interactome.
Kwok CK
Biochem Soc Trans; 2016 Oct; 44(5):1395-1410. PubMed ID: 27911722
[TBL] [Abstract][Full Text] [Related]
32. New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes.
Parker BJ; Moltke I; Roth A; Washietl S; Wen J; Kellis M; Breaker R; Pedersen JS
Genome Res; 2011 Nov; 21(11):1929-43. PubMed ID: 21994249
[TBL] [Abstract][Full Text] [Related]
33. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.
Dinger ME; Amaral PP; Mercer TR; Pang KC; Bruce SJ; Gardiner BB; Askarian-Amiri ME; Ru K; Soldà G; Simons C; Sunkin SM; Crowe ML; Grimmond SM; Perkins AC; Mattick JS
Genome Res; 2008 Sep; 18(9):1433-45. PubMed ID: 18562676
[TBL] [Abstract][Full Text] [Related]
34. Evolutionarily divergent spliceosomal snRNAs and a conserved non-coding RNA processing motif in Giardia lamblia.
Hudson AJ; Moore AN; Elniski D; Joseph J; Yee J; Russell AG
Nucleic Acids Res; 2012 Nov; 40(21):10995-1008. PubMed ID: 23019220
[TBL] [Abstract][Full Text] [Related]
35. Genome-wide measurement of RNA folding energies.
Wan Y; Qu K; Ouyang Z; Kertesz M; Li J; Tibshirani R; Makino DL; Nutter RC; Segal E; Chang HY
Mol Cell; 2012 Oct; 48(2):169-81. PubMed ID: 22981864
[TBL] [Abstract][Full Text] [Related]
36. Profiling of RNA Structure at Single-Nucleotide Resolution Using nextPARS.
Chorostecki U; Willis JR; Saus E; Gabaldon T
Methods Mol Biol; 2021; 2284():51-62. PubMed ID: 33835437
[TBL] [Abstract][Full Text] [Related]
37. Epitranscriptomic technologies and analyses.
Li X; Liang QX; Lin JR; Peng J; Yang JH; Yi C; Yu Y; Zhang QC; Zhou KR
Sci China Life Sci; 2020 Apr; 63(4):501-515. PubMed ID: 32170629
[TBL] [Abstract][Full Text] [Related]
38. Systematic discovery of structural elements governing stability of mammalian messenger RNAs.
Goodarzi H; Najafabadi HS; Oikonomou P; Greco TM; Fish L; Salavati R; Cristea IM; Tavazoie S
Nature; 2012 Apr; 485(7397):264-8. PubMed ID: 22495308
[TBL] [Abstract][Full Text] [Related]
39. Parallel computation of genome-scale RNA secondary structure to detect structural constraints on human genome.
Kawaguchi R; Kiryu H
BMC Bioinformatics; 2016 May; 17(1):203. PubMed ID: 27153986
[TBL] [Abstract][Full Text] [Related]
40. High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states.
Wilkinson KA; Gorelick RJ; Vasa SM; Guex N; Rein A; Mathews DH; Giddings MC; Weeks KM
PLoS Biol; 2008 Apr; 6(4):e96. PubMed ID: 18447581
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]