These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Spectral gene set enrichment (SGSE). Frost HR; Li Z; Moore JH BMC Bioinformatics; 2015 Mar; 16():70. PubMed ID: 25879888 [TBL] [Abstract][Full Text] [Related]
3. A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis. Reese SE; Archer KJ; Therneau TM; Atkinson EJ; Vachon CM; de Andrade M; Kocher JP; Eckel-Passow JE Bioinformatics; 2013 Nov; 29(22):2877-83. PubMed ID: 23958724 [TBL] [Abstract][Full Text] [Related]
4. Clustering of diverse genomic data using information fusion. Kasturi J; Acharya R Bioinformatics; 2005 Feb; 21(4):423-9. PubMed ID: 15608052 [TBL] [Abstract][Full Text] [Related]
5. Supervised principal component analysis for gene set enrichment of microarray data with continuous or survival outcomes. Chen X; Wang L; Smith JD; Zhang B Bioinformatics; 2008 Nov; 24(21):2474-81. PubMed ID: 18753155 [TBL] [Abstract][Full Text] [Related]
7. Identifying periodically expressed transcripts in microarray time series data. Wichert S; Fokianos K; Strimmer K Bioinformatics; 2004 Jan; 20(1):5-20. PubMed ID: 14693803 [TBL] [Abstract][Full Text] [Related]
8. Biologically valid linear factor models of gene expression. Girolami M; Breitling R Bioinformatics; 2004 Nov; 20(17):3021-33. PubMed ID: 15201181 [TBL] [Abstract][Full Text] [Related]
9. Probabilistic models of genetic variation in structured populations applied to global human studies. Hao W; Song M; Storey JD Bioinformatics; 2016 Mar; 32(5):713-21. PubMed ID: 26545820 [TBL] [Abstract][Full Text] [Related]
10. Interpretation of ANOVA models for microarray data using PCA. de Haan JR; Wehrens R; Bauerschmidt S; Piek E; van Schaik RC; Buydens LM Bioinformatics; 2007 Jan; 23(2):184-90. PubMed ID: 17105717 [TBL] [Abstract][Full Text] [Related]
11. Latent Feature Decompositions for Integrative Analysis of Multi-Platform Genomic Data. Gregory KB; Momin AA; Coombes KR; Baladandayuthapani V IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(6):984-94. PubMed ID: 26146492 [TBL] [Abstract][Full Text] [Related]
12. Partitioning large-sample microarray-based gene expression profiles using principal components analysis. Peterson LE Comput Methods Programs Biomed; 2003 Feb; 70(2):107-19. PubMed ID: 12507787 [TBL] [Abstract][Full Text] [Related]
13. Differential regulation enrichment analysis via the integration of transcriptional regulatory network and gene expression data. Ma S; Jiang T; Jiang R Bioinformatics; 2015 Feb; 31(4):563-71. PubMed ID: 25322838 [TBL] [Abstract][Full Text] [Related]
14. Colony size measurement of the yeast gene deletion strains for functional genomics. Memarian N; Jessulat M; Alirezaie J; Mir-Rashed N; Xu J; Zareie M; Smith M; Golshani A BMC Bioinformatics; 2007 Apr; 8():117. PubMed ID: 17408490 [TBL] [Abstract][Full Text] [Related]
15. Using chemometrics for navigating in the large data sets of genomics, proteomics, and metabonomics (gpm). Eriksson L; Antti H; Gottfries J; Holmes E; Johansson E; Lindgren F; Long I; Lundstedt T; Trygg J; Wold S Anal Bioanal Chem; 2004 Oct; 380(3):419-29. PubMed ID: 15448969 [TBL] [Abstract][Full Text] [Related]
16. Principal component analysis based methods in bioinformatics studies. Ma S; Dai Y Brief Bioinform; 2011 Nov; 12(6):714-22. PubMed ID: 21242203 [TBL] [Abstract][Full Text] [Related]
17. Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality. Qi Y; Ye P; Bader JS BMC Bioinformatics; 2005 Dec; 6():288. PubMed ID: 16332255 [TBL] [Abstract][Full Text] [Related]
18. Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Väremo L; Nielsen J; Nookaew I Nucleic Acids Res; 2013 Apr; 41(8):4378-91. PubMed ID: 23444143 [TBL] [Abstract][Full Text] [Related]
19. Assessing statistical significance in microarray experiments using the distance between microarrays. Hayden D; Lazar P; Schoenfeld D; PLoS One; 2009 Jun; 4(6):e5838. PubMed ID: 19529777 [TBL] [Abstract][Full Text] [Related]