These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

185 related articles for article (PubMed ID: 25338092)

  • 41. DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment.
    Fukuda H; Tomii K
    BMC Bioinformatics; 2020 Jan; 21(1):10. PubMed ID: 31918654
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction.
    Faraggi E; Yang Y; Zhang S; Zhou Y
    Structure; 2009 Nov; 17(11):1515-27. PubMed ID: 19913486
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Protein structure prediction: making AWSEM AWSEM-ER by adding evolutionary restraints.
    Sirovetz BJ; Schafer NP; Wolynes PG
    Proteins; 2017 Nov; 85(11):2127-2142. PubMed ID: 28799172
    [TBL] [Abstract][Full Text] [Related]  

  • 44. NetTurnP--neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features.
    Petersen B; Lundegaard C; Petersen TN
    PLoS One; 2010 Nov; 5(11):e15079. PubMed ID: 21152409
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Identification of residue pairing in interacting β-strands from a predicted residue contact map.
    Mao W; Wang T; Zhang W; Gong H
    BMC Bioinformatics; 2018 Apr; 19(1):146. PubMed ID: 29673311
    [TBL] [Abstract][Full Text] [Related]  

  • 46. ProteinUnet-An efficient alternative to SPIDER3-single for sequence-based prediction of protein secondary structures.
    Kotowski K; Smolarczyk T; Roterman-Konieczna I; Stapor K
    J Comput Chem; 2021 Jan; 42(1):50-59. PubMed ID: 33058261
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.
    Zhang C; Mortuza SM; He B; Wang Y; Zhang Y
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):136-151. PubMed ID: 29082551
    [TBL] [Abstract][Full Text] [Related]  

  • 48. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
    Zhang Y; Kolinski A; Skolnick J
    Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Robust and accurate prediction of protein self-interactions from amino acids sequence using evolutionary information.
    An JY; You ZH; Chen X; Huang DS; Yan G; Wang DF
    Mol Biosyst; 2016 Nov; 12(12):3702-3710. PubMed ID: 27759121
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments.
    Zheng C; Kurgan L
    BMC Bioinformatics; 2008 Oct; 9():430. PubMed ID: 18847492
    [TBL] [Abstract][Full Text] [Related]  

  • 51. DeepCDpred: Inter-residue distance and contact prediction for improved prediction of protein structure.
    Ji S; Oruç T; Mead L; Rehman MF; Thomas CM; Butterworth S; Winn PJ
    PLoS One; 2019; 14(1):e0205214. PubMed ID: 30620738
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Prediction of protein beta-residue contacts by Markov logic networks with grounding-specific weights.
    Lippi M; Frasconi P
    Bioinformatics; 2009 Sep; 25(18):2326-33. PubMed ID: 19592394
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Evolution and similarity evaluation of protein structures in contact map space.
    Gupta N; Mangal N; Biswas S
    Proteins; 2005 May; 59(2):196-204. PubMed ID: 15726585
    [TBL] [Abstract][Full Text] [Related]  

  • 54. COMSAT: Residue contact prediction of transmembrane proteins based on support vector machines and mixed integer linear programming.
    Zhang H; Huang Q; Bei Z; Wei Y; Floudas CA
    Proteins; 2016 Mar; 84(3):332-48. PubMed ID: 26756402
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Effective inter-residue contact definitions for accurate protein fold recognition.
    Yuan C; Chen H; Kihara D
    BMC Bioinformatics; 2012 Nov; 13():292. PubMed ID: 23140471
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Improving accuracy of protein contact prediction using balanced network deconvolution.
    Sun HP; Huang Y; Wang XF; Zhang Y; Shen HB
    Proteins; 2015 Mar; 83(3):485-96. PubMed ID: 25524593
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.
    Kandathil SM; Greener JG; Jones DT
    Proteins; 2019 Dec; 87(12):1092-1099. PubMed ID: 31298436
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Efficient identification of near-native conformations in ab initio protein structure prediction using structural profiles.
    Wolff K; Vendruscolo M; Porto M
    Proteins; 2010 Feb; 78(2):249-58. PubMed ID: 19701942
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Principles, challenges and advances in ab initio protein structure prediction.
    Jothi A
    Protein Pept Lett; 2012 Nov; 19(11):1194-204. PubMed ID: 22587787
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Improving protein-protein interaction prediction using evolutionary information from low-quality MSAs.
    Várnai C; Burkoff NS; Wild DL
    PLoS One; 2017; 12(2):e0169356. PubMed ID: 28166227
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.