357 related articles for article (PubMed ID: 25340971)
21. Computational modeling of allosteric communication reveals organizing principles of mutation-induced signaling in ABL and EGFR kinases.
Dixit A; Verkhivker GM
PLoS Comput Biol; 2011 Oct; 7(10):e1002179. PubMed ID: 21998569
[TBL] [Abstract][Full Text] [Related]
22. Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.
Gerek ZN; Ozkan SB
PLoS Comput Biol; 2011 Oct; 7(10):e1002154. PubMed ID: 21998559
[TBL] [Abstract][Full Text] [Related]
23. Ensemble- and Rigidity Theory-Based Perturbation Approach To Analyze Dynamic Allostery.
Pfleger C; Minges A; Boehm M; McClendon CL; Torella R; Gohlke H
J Chem Theory Comput; 2017 Dec; 13(12):6343-6357. PubMed ID: 29112408
[TBL] [Abstract][Full Text] [Related]
24. Detection of allosteric signal transmission by information-theoretic analysis of protein dynamics.
Pandini A; Fornili A; Fraternali F; Kleinjung J
FASEB J; 2012 Feb; 26(2):868-81. PubMed ID: 22071506
[TBL] [Abstract][Full Text] [Related]
25. Systems Approaches to Understanding and Designing Allosteric Proteins.
Raman S
Biochemistry; 2018 Jan; 57(4):376-382. PubMed ID: 29235352
[TBL] [Abstract][Full Text] [Related]
26. Variations in clique and community patterns in protein structures during allosteric communication: investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes.
Ghosh A; Vishveshwara S
Biochemistry; 2008 Nov; 47(44):11398-407. PubMed ID: 18842003
[TBL] [Abstract][Full Text] [Related]
27. Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity.
Chauvot de Beauchêne I; Allain A; Panel N; Laine E; Trouvé A; Dubreuil P; Tchertanov L
PLoS Comput Biol; 2014 Jul; 10(7):e1003749. PubMed ID: 25079768
[TBL] [Abstract][Full Text] [Related]
28. Uncovering allosteric pathways in caspase-1 using Markov transient analysis and multiscale community detection.
Amor B; Yaliraki SN; Woscholski R; Barahona M
Mol Biosyst; 2014 Aug; 10(8):2247-58. PubMed ID: 24947802
[TBL] [Abstract][Full Text] [Related]
29. Identification of Allosteric Effects in Proteins by Elastic Network Models.
Hu G
Methods Mol Biol; 2021; 2253():21-35. PubMed ID: 33315216
[TBL] [Abstract][Full Text] [Related]
30. Integrating molecular dynamics and co-evolutionary analysis for reliable target prediction and deregulation of the allosteric inhibition of aspartokinase for amino acid production.
Chen Z; Rappert S; Sun J; Zeng AP
J Biotechnol; 2011 Jul; 154(4):248-54. PubMed ID: 21609739
[TBL] [Abstract][Full Text] [Related]
31. Allosteric communication and signal transduction in proteins.
Wu N; Barahona M; Yaliraki SN
Curr Opin Struct Biol; 2024 Feb; 84():102737. PubMed ID: 38171189
[TBL] [Abstract][Full Text] [Related]
32. Allosteric communication in dihydrofolate reductase: signaling network and pathways for closed to occluded transition and back.
Chen J; Dima RI; Thirumalai D
J Mol Biol; 2007 Nov; 374(1):250-66. PubMed ID: 17916364
[TBL] [Abstract][Full Text] [Related]
33. A self-consistent structural perturbation approach for determining the magnitude and extent of allosteric coupling in proteins.
Rajasekaran N; Naganathan AN
Biochem J; 2017 Jul; 474(14):2379-2388. PubMed ID: 28522638
[TBL] [Abstract][Full Text] [Related]
34. Dynamical network of residue-residue contacts reveals coupled allosteric effects in recognition, catalysis, and mutation.
Doshi U; Holliday MJ; Eisenmesser EZ; Hamelberg D
Proc Natl Acad Sci U S A; 2016 Apr; 113(17):4735-40. PubMed ID: 27071107
[TBL] [Abstract][Full Text] [Related]
35. Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response.
Tee WV; Guarnera E; Berezovsky IN
PLoS Comput Biol; 2018 Jun; 14(6):e1006228. PubMed ID: 29912863
[TBL] [Abstract][Full Text] [Related]
36. Neural relational inference to learn long-range allosteric interactions in proteins from molecular dynamics simulations.
Zhu J; Wang J; Han W; Xu D
Nat Commun; 2022 Mar; 13(1):1661. PubMed ID: 35351887
[TBL] [Abstract][Full Text] [Related]
37. Identification of an Evolutionarily Conserved Allosteric Network in Steroid Receptors.
Dube N; Khan SH; Sasse R; Okafor CD
J Chem Inf Model; 2023 Jan; 63(2):571-582. PubMed ID: 36594606
[TBL] [Abstract][Full Text] [Related]
38. Contact rearrangements form coupled networks from local motions in allosteric proteins.
Daily MD; Upadhyaya TJ; Gray JJ
Proteins; 2008 Apr; 71(1):455-66. PubMed ID: 17957766
[TBL] [Abstract][Full Text] [Related]
39. Mapping the intramolecular signal propagation pathways in protein using Bayesian change point analysis of atomic motions.
Iakhiaev MA; Iakhiaev AV
Comput Biol Chem; 2013 Dec; 47():89-95. PubMed ID: 24025705
[TBL] [Abstract][Full Text] [Related]
40. xPyder: a PyMOL plugin to analyze coupled residues and their networks in protein structures.
Pasi M; Tiberti M; Arrigoni A; Papaleo E
J Chem Inf Model; 2012 Jul; 52(7):1865-74. PubMed ID: 22721491
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]