198 related articles for article (PubMed ID: 25343864)
1. Methods for assembling reads and producing contigs.
Orlandini V; Fondi M; Fani R
Methods Mol Biol; 2015; 1231():151-61. PubMed ID: 25343864
[TBL] [Abstract][Full Text] [Related]
2. Mapping contigs using CONTIGuator.
Galardini M; Mengoni A; Bazzicalupo M
Methods Mol Biol; 2015; 1231():163-76. PubMed ID: 25343865
[TBL] [Abstract][Full Text] [Related]
3. Gene calling and bacterial genome annotation with BG7.
Tobes R; Pareja-Tobes P; Manrique M; Pareja-Tobes E; Kovach E; Alekhin A; Pareja E
Methods Mol Biol; 2015; 1231():177-89. PubMed ID: 25343866
[TBL] [Abstract][Full Text] [Related]
4. Sequence assembly using next generation sequencing data--challenges and solutions.
Chin FY; Leung HC; Yiu SM
Sci China Life Sci; 2014 Nov; 57(11):1140-8. PubMed ID: 25326069
[TBL] [Abstract][Full Text] [Related]
5. CSAR: a contig scaffolding tool using algebraic rearrangements.
Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
[TBL] [Abstract][Full Text] [Related]
6. Raw sequence data and quality control.
Bacci G
Methods Mol Biol; 2015; 1231():137-49. PubMed ID: 25343863
[TBL] [Abstract][Full Text] [Related]
7. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
Boisvert S; Laviolette F; Corbeil J
J Comput Biol; 2010 Nov; 17(11):1519-33. PubMed ID: 20958248
[TBL] [Abstract][Full Text] [Related]
8. Identifying wrong assemblies in de novo short read primary sequence assembly contigs.
Chawla V; Kumar R; Shankar R
J Biosci; 2016 Sep; 41(3):455-74. PubMed ID: 27581937
[TBL] [Abstract][Full Text] [Related]
9. BAC sequencing using pooled methods.
Saski CA; Feltus FA; Parida L; Haiminen N
Methods Mol Biol; 2015; 1227():55-67. PubMed ID: 25239741
[TBL] [Abstract][Full Text] [Related]
10. Assembling millions of short DNA sequences using SSAKE.
Warren RL; Sutton GG; Jones SJ; Holt RA
Bioinformatics; 2007 Feb; 23(4):500-1. PubMed ID: 17158514
[TBL] [Abstract][Full Text] [Related]
11. U
Castro CJ; Ng TFF
J Comput Biol; 2017 Nov; 24(11):1071-1080. PubMed ID: 28418726
[TBL] [Abstract][Full Text] [Related]
12. Fragment assembly with short reads.
Chaisson M; Pevzner P; Tang H
Bioinformatics; 2004 Sep; 20(13):2067-74. PubMed ID: 15059830
[TBL] [Abstract][Full Text] [Related]
13. Defining orthologs and pangenome size metrics.
Bosi E; Fani R; Fondi M
Methods Mol Biol; 2015; 1231():191-202. PubMed ID: 25343867
[TBL] [Abstract][Full Text] [Related]
14. Multi-CAR: a tool of contig scaffolding using multiple references.
Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
[TBL] [Abstract][Full Text] [Related]
15. Heterozygous genome assembly via binary classification of homologous sequence.
Bodily PM; Fujimoto M; Ortega C; Okuda N; Price JC; Clement MJ; Snell Q
BMC Bioinformatics; 2015; 16 Suppl 7(Suppl 7):S5. PubMed ID: 25952609
[TBL] [Abstract][Full Text] [Related]
16. Safe and Complete Contig Assembly Through Omnitigs.
Tomescu AI; Medvedev P
J Comput Biol; 2017 Jun; 24(6):590-602. PubMed ID: 27749096
[TBL] [Abstract][Full Text] [Related]
17. Short read fragment assembly of bacterial genomes.
Chaisson MJ; Pevzner PA
Genome Res; 2008 Feb; 18(2):324-30. PubMed ID: 18083777
[TBL] [Abstract][Full Text] [Related]
18. ScaffMatch: scaffolding algorithm based on maximum weight matching.
Mandric I; Zelikovsky A
Bioinformatics; 2015 Aug; 31(16):2632-8. PubMed ID: 25890305
[TBL] [Abstract][Full Text] [Related]
19. Efficient and scalable scaffolding using optical restriction maps.
Saha S; Rajasekaran S
BMC Genomics; 2014; 15 Suppl 5(Suppl 5):S5. PubMed ID: 25081913
[TBL] [Abstract][Full Text] [Related]
20. From FASTQ to Function: In Silico Methods for Processing Next-Generation Sequencing Data.
Preston MD; Stabler RA
Methods Mol Biol; 2016; 1476():23-33. PubMed ID: 27507331
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
