231 related articles for article (PubMed ID: 25343865)
1. Mapping contigs using CONTIGuator.
Galardini M; Mengoni A; Bazzicalupo M
Methods Mol Biol; 2015; 1231():163-76. PubMed ID: 25343865
[TBL] [Abstract][Full Text] [Related]
2. Methods for assembling reads and producing contigs.
Orlandini V; Fondi M; Fani R
Methods Mol Biol; 2015; 1231():151-61. PubMed ID: 25343864
[TBL] [Abstract][Full Text] [Related]
3. Gene calling and bacterial genome annotation with BG7.
Tobes R; Pareja-Tobes P; Manrique M; Pareja-Tobes E; Kovach E; Alekhin A; Pareja E
Methods Mol Biol; 2015; 1231():177-89. PubMed ID: 25343866
[TBL] [Abstract][Full Text] [Related]
4. Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.
van Hijum SA; Zomer AL; Kuipers OP; Kok J
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W560-6. PubMed ID: 15980536
[TBL] [Abstract][Full Text] [Related]
5. CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes.
Galardini M; Biondi EG; Bazzicalupo M; Mengoni A
Source Code Biol Med; 2011 Jun; 6():11. PubMed ID: 21693004
[TBL] [Abstract][Full Text] [Related]
6. Multi-CAR: a tool of contig scaffolding using multiple references.
Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
[TBL] [Abstract][Full Text] [Related]
7. OSLay: optimal syntenic layout of unfinished assemblies.
Richter DC; Schuster SC; Huson DH
Bioinformatics; 2007 Jul; 23(13):1573-9. PubMed ID: 17463020
[TBL] [Abstract][Full Text] [Related]
8. CAR: contig assembly of prokaryotic draft genomes using rearrangements.
Lu CL; Chen KT; Huang SY; Chiu HT
BMC Bioinformatics; 2014 Nov; 15(1):381. PubMed ID: 25431302
[TBL] [Abstract][Full Text] [Related]
9. Hierarchical scaffolding with Bambus.
Pop M; Kosack DS; Salzberg SL
Genome Res; 2004 Jan; 14(1):149-59. PubMed ID: 14707177
[TBL] [Abstract][Full Text] [Related]
10. CSAR: a contig scaffolding tool using algebraic rearrangements.
Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
[TBL] [Abstract][Full Text] [Related]
11. GI-POP: a combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects.
Lee CC; Chen YP; Yao TJ; Ma CY; Lo WC; Lyu PC; Tang CY
Gene; 2013 Apr; 518(1):114-23. PubMed ID: 23318308
[TBL] [Abstract][Full Text] [Related]
12. A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs.
Swain MT; Tsai IJ; Assefa SA; Newbold C; Berriman M; Otto TD
Nat Protoc; 2012 Jun; 7(7):1260-84. PubMed ID: 22678431
[TBL] [Abstract][Full Text] [Related]
13. [Complete genome sequencing and sequence analysis of BCG Tice].
Wang Z; Pan Y; Wu J; Zhu B
Wei Sheng Wu Xue Bao; 2012 Oct; 52(10):1219-27. PubMed ID: 23289320
[TBL] [Abstract][Full Text] [Related]
14. PGA4genomics for comparative genome assembly based on genetic algorithm optimization.
Zhao F; Hou H; Bao Q; Wu J
Genomics; 2009 Oct; 94(4):284-6. PubMed ID: 19573591
[TBL] [Abstract][Full Text] [Related]
15. Defining orthologs and pangenome size metrics.
Bosi E; Fani R; Fondi M
Methods Mol Biol; 2015; 1231():191-202. PubMed ID: 25343867
[TBL] [Abstract][Full Text] [Related]
16. SIS: a program to generate draft genome sequence scaffolds for prokaryotes.
Dias Z; Dias U; Setubal JC
BMC Bioinformatics; 2012 May; 13():96. PubMed ID: 22583530
[TBL] [Abstract][Full Text] [Related]
17. Characterization of 954 bovine full-CDS cDNA sequences.
Harhay GP; Sonstegard TS; Keele JW; Heaton MP; Clawson ML; Snelling WM; Wiedmann RT; Van Tassell CP; Smith TP
BMC Genomics; 2005 Nov; 6():166. PubMed ID: 16305752
[TBL] [Abstract][Full Text] [Related]
18. Robust identification of orthologues and paralogues for microbial pan-genomics using GET_HOMOLOGUES: a case study of pIncA/C plasmids.
Vinuesa P; Contreras-Moreira B
Methods Mol Biol; 2015; 1231():203-32. PubMed ID: 25343868
[TBL] [Abstract][Full Text] [Related]
19. SLIQ: simple linear inequalities for efficient contig scaffolding.
Roy RS; Chen KC; Sengupta AM; Schliep A
J Comput Biol; 2012 Oct; 19(10):1162-75. PubMed ID: 23057825
[TBL] [Abstract][Full Text] [Related]
20. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
