These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

239 related articles for article (PubMed ID: 25344498)

  • 21. Bit-parallel sequence-to-graph alignment.
    Rautiainen M; Mäkinen V; Marschall T
    Bioinformatics; 2019 Oct; 35(19):3599-3607. PubMed ID: 30851095
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Kmer2SNP: Reference-Free Heterozygous SNP Calling Using k-mer Frequency Distributions.
    Li Y; Patel H; Lin Y
    Methods Mol Biol; 2022; 2493():257-265. PubMed ID: 35751820
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Fast alignment of reads to a variation graph with application to SNP detection.
    Monsu M; Comin M
    J Integr Bioinform; 2021 Nov; 18(4):. PubMed ID: 34783230
    [TBL] [Abstract][Full Text] [Related]  

  • 24. ReliableGenome: annotation of genomic regions with high/low variant calling concordance.
    Popitsch N; ; Schuh A; Taylor JC
    Bioinformatics; 2017 Jan; 33(2):155-160. PubMed ID: 27605105
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence.
    You FM; Huo N; Deal KR; Gu YQ; Luo MC; McGuire PE; Dvorak J; Anderson OD
    BMC Genomics; 2011 Jan; 12():59. PubMed ID: 21266061
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Population-scale detection of non-reference sequence variants using colored de Bruijn graphs.
    Krannich T; White WTJ; Niehus S; Holley G; Halldórsson BV; Kehr B
    Bioinformatics; 2022 Jan; 38(3):604-611. PubMed ID: 34726732
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly.
    Li H
    Bioinformatics; 2012 Jul; 28(14):1838-44. PubMed ID: 22569178
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions.
    Dou J; Zhao X; Fu X; Jiao W; Wang N; Zhang L; Hu X; Wang S; Bao Z
    Biol Direct; 2012 Jun; 7():17. PubMed ID: 22682067
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Compact representation of k-mer de Bruijn graphs for genome read assembly.
    Rødland EA
    BMC Bioinformatics; 2013 Oct; 14():313. PubMed ID: 24152242
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs.
    Kundeti VK; Rajasekaran S; Dinh H; Vaughn M; Thapar V
    BMC Bioinformatics; 2010 Nov; 11():560. PubMed ID: 21078174
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Chaining for accurate alignment of erroneous long reads to acyclic variation graphs.
    Ma J; Cáceres M; Salmela L; Mäkinen V; Tomescu AI
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37494467
    [TBL] [Abstract][Full Text] [Related]  

  • 33. An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.
    Ribeiro A; Golicz A; Hackett CA; Milne I; Stephen G; Marshall D; Flavell AJ; Bayer M
    BMC Bioinformatics; 2015 Nov; 16():382. PubMed ID: 26558718
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.
    Stothard P; Choi JW; Basu U; Sumner-Thomson JM; Meng Y; Liao X; Moore SS
    BMC Genomics; 2011 Nov; 12():559. PubMed ID: 22085807
    [TBL] [Abstract][Full Text] [Related]  

  • 35. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
    Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW
    BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Read mapping on de Bruijn graphs.
    Limasset A; Cazaux B; Rivals E; Peterlongo P
    BMC Bioinformatics; 2016 Jun; 17(1):237. PubMed ID: 27306641
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Graphical pan-genome analysis with compressed suffix trees and the Burrows-Wheeler transform.
    Baier U; Beller T; Ohlebusch E
    Bioinformatics; 2016 Feb; 32(4):497-504. PubMed ID: 26504144
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Integration of string and de Bruijn graphs for genome assembly.
    Huang YT; Liao CF
    Bioinformatics; 2016 May; 32(9):1301-7. PubMed ID: 26755626
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data.
    Kobayashi M; Ohyanagi H; Takanashi H; Asano S; Kudo T; Kajiya-Kanegae H; Nagano AJ; Tainaka H; Tokunaga T; Sazuka T; Iwata H; Tsutsumi N; Yano K
    DNA Res; 2017 Aug; 24(4):397-405. PubMed ID: 28498906
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.
    Leggett RM; Ramirez-Gonzalez RH; Verweij W; Kawashima CG; Iqbal Z; Jones JD; Caccamo M; Maclean D
    PLoS One; 2013; 8(3):e60058. PubMed ID: 23536903
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.