BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

109 related articles for article (PubMed ID: 25374662)

  • 1. iReport: a generalised Galaxy solution for integrated experimental reporting.
    Hiltemann S; Hoogstrate Y; der Spek Pv; Jenster G; Stubbs A
    Gigascience; 2014; 3():19. PubMed ID: 25374662
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy.
    Hiltemann S; Mei H; de Hollander M; Palli I; van der Spek P; Jenster G; Stubbs A
    Gigascience; 2014 Jan; 3(1):1. PubMed ID: 24460651
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FAIR data retrieval for sensitive clinical research data in Galaxy.
    Ouwerkerk J; Rasche H; Spalding JD; Hiltemann S; Stubbs AP
    Gigascience; 2024 Jan; 13():. PubMed ID: 38280189
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Improve your Galaxy text life: The Query Tabular Tool.
    Johnson JE; Kumar P; Easterly C; Esler M; Mehta S; Eschenlauer AC; Hegeman AD; Jagtap PD; Griffin TJ
    F1000Res; 2018; 7():1604. PubMed ID: 30519459
    [TBL] [Abstract][Full Text] [Related]  

  • 5. IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
    Merelli I; Viti F; Milanesi L
    BMC Bioinformatics; 2012; 13 Suppl 14(Suppl 14):S5. PubMed ID: 23095257
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Galaxy mothur Toolset (GmT): a user-friendly application for 16S rRNA gene sequencing analysis using mothur.
    Hiltemann SD; Boers SA; van der Spek PJ; Jansen R; Hays JP; Stubbs AP
    Gigascience; 2019 Feb; 8(2):. PubMed ID: 30597007
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An architecture for genomics analysis in a clinical setting using Galaxy and Docker.
    Digan W; Countouris H; Barritault M; Baudoin D; Laurent-Puig P; Blons H; Burgun A; Rance B
    Gigascience; 2017 Nov; 6(11):1-9. PubMed ID: 29048555
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Web-based visual analysis for high-throughput genomics.
    Goecks J; Eberhard C; Too T; ; Nekrutenko A; Taylor J
    BMC Genomics; 2013 Jun; 14():397. PubMed ID: 23758618
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data.
    Zanardi N; Morini M; Tangaro MA; Zambelli F; Bosco MC; Varesio L; Eva A; Cangelosi D
    Sci Rep; 2019 Nov; 9(1):17550. PubMed ID: 31772190
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PDAUG: a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling.
    Joshi J; Blankenberg D
    BMC Bioinformatics; 2022 May; 23(1):197. PubMed ID: 35643441
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ImmunoGlobulin galaxy (IGGalaxy) for simple determination and quantitation of immunoglobulin heavy chain rearrangements from NGS.
    Moorhouse MJ; van Zessen D; IJspeert H; Hiltemann S; Horsman S; van der Spek PJ; van der Burg M; Stubbs AP
    BMC Immunol; 2014 Dec; 15():59. PubMed ID: 25495099
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.).
    Baldwin S; Revanna R; Thomson S; Pither-Joyce M; Wright K; Crowhurst R; Fiers M; Chen L; Macknight R; McCallum JA
    BMC Genomics; 2012 Nov; 13():637. PubMed ID: 23157543
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Analysis of next-generation sequencing data using Galaxy.
    Blankenberg D; Hillman-Jackson J
    Methods Mol Biol; 2014; 1150():21-43. PubMed ID: 24743989
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Galaxy LIMS for next-generation sequencing.
    Scholtalbers J; Rößler J; Sorn P; de Graaf J; Boisguérin V; Castle J; Sahin U
    Bioinformatics; 2013 May; 29(9):1233-4. PubMed ID: 23479349
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology.
    Cock PJ; Grüning BA; Paszkiewicz K; Pritchard L
    PeerJ; 2013; 1():e167. PubMed ID: 24109552
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis.
    Blanck S; Marot G
    Gigascience; 2019 Feb; 8(2):. PubMed ID: 30698691
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system.
    Oakley TH; Alexandrou MA; Ngo R; Pankey MS; Churchill CK; Chen W; Lopker KB
    BMC Bioinformatics; 2014 Jul; 15():230. PubMed ID: 24990571
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Fully automated pipeline for detection of sex linked genes using RNA-Seq data.
    Michalovova M; Kubat Z; Hobza R; Vyskot B; Kejnovsky E
    BMC Bioinformatics; 2015 Mar; 16(1):78. PubMed ID: 25884927
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.
    Chen S; Zhou Y; Chen Y; Huang T; Liao W; Xu Y; Li Z; Gu J
    BMC Bioinformatics; 2019 Dec; 20(Suppl 23):606. PubMed ID: 31881822
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.
    Blank C; Easterly C; Gruening B; Johnson J; Kolmeder CA; Kumar P; May D; Mehta S; Mesuere B; Brown Z; Elias JE; Hervey WJ; McGowan T; Muth T; Nunn B; Rudney J; Tanca A; Griffin TJ; Jagtap PD
    Proteomes; 2018 Jan; 6(1):. PubMed ID: 29385081
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.