BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

300 related articles for article (PubMed ID: 25378309)

  • 1. Optimization of transcription factor binding map accuracy utilizing knockout-mouse models.
    Krebs W; Schmidt SV; Goren A; De Nardo D; Labzin L; Bovier A; Ulas T; Theis H; Kraut M; Latz E; Beyer M; Schultze JL
    Nucleic Acids Res; 2014 Dec; 42(21):13051-60. PubMed ID: 25378309
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Ritornello: high fidelity control-free chromatin immunoprecipitation peak calling.
    Stanton KP; Jin J; Lederman RR; Weissman SM; Kluger Y
    Nucleic Acids Res; 2017 Dec; 45(21):e173. PubMed ID: 28981893
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.
    Lefrançois P; Zheng W; Snyder M
    Methods Enzymol; 2010; 470():77-104. PubMed ID: 20946807
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.
    Brdlik CM; Niu W; Snyder M
    Methods Enzymol; 2014; 539():89-111. PubMed ID: 24581441
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Fast Cluster Motif Finding Algorithm for ChIP-Seq Data Sets.
    Zhang Y; Wang P
    Biomed Res Int; 2015; 2015():218068. PubMed ID: 26236718
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome-wide profiling of transcription factor binding and epigenetic marks in adipocytes by ChIP-seq.
    Nielsen R; Mandrup S
    Methods Enzymol; 2014; 537():261-79. PubMed ID: 24480351
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Integrative analysis of ChIP-chip and ChIP-seq dataset.
    Zhu LJ
    Methods Mol Biol; 2013; 1067():105-24. PubMed ID: 23975789
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Optimizing detection of transcription factor-binding sites in ChIP-seq experiments.
    Kallio A; Elo LL
    Methods Mol Biol; 2013; 1038():181-91. PubMed ID: 23872976
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ChIP-BIT: Bayesian inference of target genes using a novel joint probabilistic model of ChIP-seq profiles.
    Chen X; Jung JG; Shajahan-Haq AN; Clarke R; Shih IeM; Wang Y; Magnani L; Wang TL; Xuan J
    Nucleic Acids Res; 2016 Apr; 44(7):e65. PubMed ID: 26704972
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments.
    Jain D; Baldi S; Zabel A; Straub T; Becker PB
    Nucleic Acids Res; 2015 Aug; 43(14):6959-68. PubMed ID: 26117547
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Direct ChIP-Seq significance analysis improves target prediction.
    Bansal M; Mendiratta G; Anand S; Kushwaha R; Kim R; Kustagi M; Iyer A; Chaganti RS; Califano A; Sumazin P
    BMC Genomics; 2015; 16 Suppl 5(Suppl 5):S4. PubMed ID: 26040656
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.
    Kähärä J; Lähdesmäki H
    Bioinformatics; 2015 Sep; 31(17):2852-9. PubMed ID: 25957350
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ChIP on chip and ChIP-Seq assays: genome-wide analysis of transcription factor binding and histone modifications.
    Pillai S; Chellappan SP
    Methods Mol Biol; 2015; 1288():447-72. PubMed ID: 25827896
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identification of C2H2-ZF binding preferences from ChIP-seq data using RCADE.
    Najafabadi HS; Albu M; Hughes TR
    Bioinformatics; 2015 Sep; 31(17):2879-81. PubMed ID: 25953800
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Standardizing chromatin research: a simple and universal method for ChIP-seq.
    Arrigoni L; Richter AS; Betancourt E; Bruder K; Diehl S; Manke T; Bönisch U
    Nucleic Acids Res; 2016 Apr; 44(7):e67. PubMed ID: 26704968
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Cell-type specificity of ChIP-predicted transcription factor binding sites.
    Håndstad T; Rye M; Močnik R; Drabløs F; Sætrom P
    BMC Genomics; 2012 Aug; 13():372. PubMed ID: 22863112
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Global analysis of transcription factor-binding sites in yeast using ChIP-Seq.
    Lefrançois P; Gallagher JE; Snyder M
    Methods Mol Biol; 2014; 1205():231-55. PubMed ID: 25213249
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Is this the right normalization? A diagnostic tool for ChIP-seq normalization.
    Angelini C; Heller R; Volkinshtein R; Yekutieli D
    BMC Bioinformatics; 2015 May; 16():150. PubMed ID: 25957089
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ChIP-Seq Data Analysis to Define Transcriptional Regulatory Networks.
    Pavesi G
    Adv Biochem Eng Biotechnol; 2017; 160():1-14. PubMed ID: 28070596
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Software for rapid time dependent ChIP-sequencing analysis (TDCA).
    Myschyshyn M; Farren-Dai M; Chuang TJ; Vocadlo D
    BMC Bioinformatics; 2017 Nov; 18(1):521. PubMed ID: 29178831
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.