164 related articles for article (PubMed ID: 25380961)
1. Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries.
Gillet-Markowska A; Richard H; Fischer G; Lafontaine I
Bioinformatics; 2015 Mar; 31(6):801-8. PubMed ID: 25380961
[TBL] [Abstract][Full Text] [Related]
2. Long span DNA paired-end-tag (DNA-PET) sequencing strategy for the interrogation of genomic structural mutations and fusion-point-guided reconstruction of amplicons.
Yao F; Ariyaratne PN; Hillmer AM; Lee WH; Li G; Teo AS; Woo XY; Zhang Z; Chen JP; Poh WT; Zawack KF; Chan CS; Leong ST; Neo SC; Choi PS; Gao S; Nagarajan N; Thoreau H; Shahab A; Ruan X; Cacheux-Rataboul V; Wei CL; Bourque G; Sung WK; Liu ET; Ruan Y
PLoS One; 2012; 7(9):e46152. PubMed ID: 23029419
[TBL] [Abstract][Full Text] [Related]
3. Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes.
Hillmer AM; Yao F; Inaki K; Lee WH; Ariyaratne PN; Teo AS; Woo XY; Zhang Z; Zhao H; Ukil L; Chen JP; Zhu F; So JB; Salto-Tellez M; Poh WT; Zawack KF; Nagarajan N; Gao S; Li G; Kumar V; Lim HP; Sia YY; Chan CS; Leong ST; Neo SC; Choi PS; Thoreau H; Tan PB; Shahab A; Ruan X; Bergh J; Hall P; Cacheux-Rataboul V; Wei CL; Yeoh KG; Sung WK; Bourque G; Liu ET; Ruan Y
Genome Res; 2011 May; 21(5):665-75. PubMed ID: 21467267
[TBL] [Abstract][Full Text] [Related]
4. BIMA V3: an aligner customized for mate pair library sequencing.
Drucker TM; Johnson SH; Murphy SJ; Cradic KW; Therneau TM; Vasmatzis G
Bioinformatics; 2014 Jun; 30(11):1627-9. PubMed ID: 24526710
[TBL] [Abstract][Full Text] [Related]
5. Seeksv: an accurate tool for somatic structural variation and virus integration detection.
Liang Y; Qiu K; Liao B; Zhu W; Huang X; Li L; Chen X; Li K
Bioinformatics; 2017 Jan; 33(2):184-191. PubMed ID: 27634948
[TBL] [Abstract][Full Text] [Related]
6. Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing.
van Heesch S; Kloosterman WP; Lansu N; Ruzius FP; Levandowsky E; Lee CC; Zhou S; Goldstein S; Schwartz DC; Harkins TT; Guryev V; Cuppen E
BMC Genomics; 2013 Apr; 14():257. PubMed ID: 23590730
[TBL] [Abstract][Full Text] [Related]
7. SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads.
Hampton OA; English AC; Wang M; Salerno WJ; Liu Y; Muzny DM; Han Y; Wheeler DA; Worley KC; Lupski JR; Gibbs RA
BMC Genomics; 2017 Oct; 18(Suppl 6):691. PubMed ID: 28984202
[TBL] [Abstract][Full Text] [Related]
8. Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone.
Trappe K; Emde AK; Ehrlich HC; Reinert K
Bioinformatics; 2014 Dec; 30(24):3484-90. PubMed ID: 25028727
[TBL] [Abstract][Full Text] [Related]
9. HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies.
Fan X; Chaisson M; Nakhleh L; Chen K
Genome Res; 2017 May; 27(5):793-800. PubMed ID: 28104618
[TBL] [Abstract][Full Text] [Related]
10. SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution.
Xia LC; Ai D; Lee H; Andor N; Li C; Zhang NR; Ji HP
Gigascience; 2018 Jul; 7(7):. PubMed ID: 29982625
[TBL] [Abstract][Full Text] [Related]
11. SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability.
Iakovishina D; Janoueix-Lerosey I; Barillot E; Regnier M; Boeva V
Bioinformatics; 2016 Apr; 32(7):984-92. PubMed ID: 26740523
[TBL] [Abstract][Full Text] [Related]
12. DELLY: structural variant discovery by integrated paired-end and split-read analysis.
Rausch T; Zichner T; Schlattl A; Stütz AM; Benes V; Korbel JO
Bioinformatics; 2012 Sep; 28(18):i333-i339. PubMed ID: 22962449
[TBL] [Abstract][Full Text] [Related]
13. RAPTR-SV: a hybrid method for the detection of structural variants.
Bickhart DM; Hutchison JL; Xu L; Schnabel RD; Taylor JF; Reecy JM; Schroeder S; Van Tassell CP; Sonstegard TS; Liu GE
Bioinformatics; 2015 Jul; 31(13):2084-90. PubMed ID: 25686638
[TBL] [Abstract][Full Text] [Related]
14. Next-generation mapping: a novel approach for detection of pathogenic structural variants with a potential utility in clinical diagnosis.
Barseghyan H; Tang W; Wang RT; Almalvez M; Segura E; Bramble MS; Lipson A; Douine ED; Lee H; Délot EC; Nelson SF; Vilain E
Genome Med; 2017 Oct; 9(1):90. PubMed ID: 29070057
[TBL] [Abstract][Full Text] [Related]
15. Assessing structural variation in a personal genome-towards a human reference diploid genome.
English AC; Salerno WJ; Hampton OA; Gonzaga-Jauregui C; Ambreth S; Ritter DI; Beck CR; Davis CF; Dahdouli M; Ma S; Carroll A; Veeraraghavan N; Bruestle J; Drees B; Hastie A; Lam ET; White S; Mishra P; Wang M; Han Y; Zhang F; Stankiewicz P; Wheeler DA; Reid JG; Muzny DM; Rogers J; Sabo A; Worley KC; Lupski JR; Boerwinkle E; Gibbs RA
BMC Genomics; 2015 Apr; 16(1):286. PubMed ID: 25886820
[TBL] [Abstract][Full Text] [Related]
16. Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv.
Shiraishi Y; Koya J; Chiba K; Okada A; Arai Y; Saito Y; Shibata T; Kataoka K
Nucleic Acids Res; 2023 Aug; 51(14):e74. PubMed ID: 37336583
[TBL] [Abstract][Full Text] [Related]
17. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
[TBL] [Abstract][Full Text] [Related]
18. Deletion Detection Method Using the Distribution of Insert Size and a Precise Alignment Strategy.
Zhang Z; Luo J; Shang J; Li M; Wu FX; Pan Y; Wang J
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(3):1070-1081. PubMed ID: 31403441
[TBL] [Abstract][Full Text] [Related]
19. Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.
Soylev A; Le TM; Amini H; Alkan C; Hormozdiari F
Bioinformatics; 2019 Oct; 35(20):3923-3930. PubMed ID: 30937433
[TBL] [Abstract][Full Text] [Related]
20. SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data.
Chiara M; Pesole G; Horner DS
Nucleic Acids Res; 2012 Oct; 40(18):e145. PubMed ID: 22735696
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
