BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

244 related articles for article (PubMed ID: 25388108)

  • 1. A beginners guide to estimating the non-synonymous to synonymous rate ratio of all protein-coding genes in a genome.
    Jeffares DC; Tomiczek B; Sojo V; dos Reis M
    Methods Mol Biol; 2015; 1201():65-90. PubMed ID: 25388108
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Beginner's Guide on the Use of PAML to Detect Positive Selection.
    Álvarez-Carretero S; Kapli P; Yang Z
    Mol Biol Evol; 2023 Apr; 40(4):. PubMed ID: 37096789
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The relationship between dN/dS and scaled selection coefficients.
    Spielman SJ; Wilke CO
    Mol Biol Evol; 2015 Apr; 32(4):1097-108. PubMed ID: 25576365
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evolutionary genomics: detecting selection needs comparative data.
    Nielsen R; Hubisz MJ
    Nature; 2005 Jan; 433(7023):E6; discussion E7-8. PubMed ID: 15662372
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Vertebrate extracellular calcium-sensing receptor evolution: selection in relation to life history and habitat.
    Herberger AL; Loretz CA
    Comp Biochem Physiol Part D Genomics Proteomics; 2013 Mar; 8(1):86-94. PubMed ID: 23321268
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Predicting genetic and ecological characteristics of bacterial species by comparing the trajectories of dN/dS and dI/dS in bacterial genomes.
    Feng Y; Chiu CH
    Mol Biosyst; 2014 Feb; 10(2):266-72. PubMed ID: 24281402
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The roles of positive and negative selection in the molecular evolution of insect endosymbionts.
    Fry AJ; Wernegreen JJ
    Gene; 2005 Aug; 355():1-10. PubMed ID: 16039807
    [TBL] [Abstract][Full Text] [Related]  

  • 8. JCoDA: a tool for detecting evolutionary selection.
    Steinway SN; Dannenfelser R; Laucius CD; Hayes JE; Nayak S
    BMC Bioinformatics; 2010 May; 11():284. PubMed ID: 20507581
    [TBL] [Abstract][Full Text] [Related]  

  • 9. How to calculate the non-synonymous to synonymous rate ratio of protein-coding genes under the Fisher-Wright mutation-selection framework.
    Dos Reis M
    Biol Lett; 2015 Apr; 11(4):20141031. PubMed ID: 25854546
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PoSE: visualization of patterns of sequence evolution using PAML and MATLAB.
    Zhao K; Henderson E; Bullard K; Oberste MS; Burns CC; Jorba J
    BMC Bioinformatics; 2018 Oct; 19(Suppl 11):364. PubMed ID: 30343671
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Two mitochondrial genes under episodic positive selection in subterranean octodontoid rodents.
    Tomasco IH; Lessa EP
    Gene; 2014 Jan; 534(2):371-8. PubMed ID: 24113079
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular evolution of the Bovini tribe (Bovidae, Bovinae): is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?
    MacEachern S; McEwan J; McCulloch A; Mather A; Savin K; Goddard M
    BMC Genomics; 2009 Apr; 10():179. PubMed ID: 19393048
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Human PAML browser: a database of positive selection on human genes using phylogenetic methods.
    Nickel GC; Tefft D; Adams MD
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D800-8. PubMed ID: 17962310
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Incorporation of transition to transversion ratio and nonsense mutations, improves the estimation of the number of synonymous and non-synonymous sites in codons.
    Aziz R; Sen P; Beura PK; Das S; Tula D; Dash M; Namsa ND; Deka RC; Feil EJ; Satapathy SS; Ray SK
    DNA Res; 2022 Jun; 29(4):. PubMed ID: 35920776
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Inference of Episodic Changes in Natural Selection Acting on Protein Coding Sequences via CODEML.
    Bielawski JP; Baker JL; Mingrone J
    Curr Protoc Bioinformatics; 2016 Jun; 54():6.15.1-6.15.32. PubMed ID: 27322407
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genetic robustness and selection at the protein level for synonymous codons.
    Archetti M
    J Evol Biol; 2006 Mar; 19(2):353-65. PubMed ID: 16599911
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Selective pressures at a codon-level predict deleterious mutations in human disease genes.
    Arbiza L; Duchi S; Montaner D; Burguet J; Pantoja-Uceda D; Pineda-Lucena A; Dopazo J; Dopazo H
    J Mol Biol; 2006 May; 358(5):1390-404. PubMed ID: 16584746
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Weak selection on synonymous codons substantially inflates
    Rahman S; Kosakovsky Pond SL; Webb A; Hey J
    Proc Natl Acad Sci U S A; 2021 May; 118(20):. PubMed ID: 33972434
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Measuring Natural Selection.
    da Silva AG
    Methods Mol Biol; 2017; 1525():315-347. PubMed ID: 27896727
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Whole-genome identification of neutrally evolving pseudogenes using the evolutionary measure dN/dS.
    Andrieux LO; Arenales DT
    Methods Mol Biol; 2014; 1167():75-85. PubMed ID: 24823772
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.