62 related articles for article (PubMed ID: 25388111)
1. Approaches for studying mRNA decay mediated by SIDER2 retroposons in Leishmania.
Papadopoulou B; Müller-McNicoll M; Padmanabhan PK
Methods Mol Biol; 2015; 1201():123-42. PubMed ID: 25388111
[TBL] [Abstract][Full Text] [Related]
2. The Pumilio-domain protein PUF6 contributes to SIDER2 retroposon-mediated mRNA decay in
Azizi H; Dumas C; Papadopoulou B
RNA; 2017 Dec; 23(12):1874-1885. PubMed ID: 28877997
[No Abstract] [Full Text] [Related]
3. Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3'-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation.
Müller M; Padmanabhan PK; Rochette A; Mukherjee D; Smith M; Dumas C; Papadopoulou B
Nucleic Acids Res; 2010 Sep; 38(17):5867-83. PubMed ID: 20453029
[TBL] [Abstract][Full Text] [Related]
4. RNA secondary structure and nucleotide composition of the conserved hallmark sequence of Leishmania SIDER2 retroposons are essential for endonucleolytic cleavage and mRNA degradation.
Azizi H; Romão TP; Santos Charret K; Padmanabhan PK; de Melo Neto OP; Müller-McNicoll M; Papadopoulou B
PLoS One; 2017; 12(7):e0180678. PubMed ID: 28704426
[TBL] [Abstract][Full Text] [Related]
5. Selective inactivation of SIDER2 retroposon-mediated mRNA decay contributes to stage- and species-specific gene expression in Leishmania.
Müller M; Padmanabhan PK; Papadopoulou B
Mol Microbiol; 2010 Jul; 77(2):471-91. PubMed ID: 20497500
[TBL] [Abstract][Full Text] [Related]
6. SIDER2 retroposon-mediated mRNA decay in Leishmania is coupled to translation.
Azizi H; Müller-McNicoll M; Papadopoulou B
Int J Parasitol; 2017 May; 47(6):305-310. PubMed ID: 28315363
[TBL] [Abstract][Full Text] [Related]
7. Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome.
Smith M; Bringaud F; Papadopoulou B
BMC Genomics; 2009 May; 10():240. PubMed ID: 19463167
[TBL] [Abstract][Full Text] [Related]
8. Genomic cartography and proposal of nomenclature for the repeated, interspersed elements of the Leishmania major SIDER2 family and identification of SIDER2-containing transcripts.
Requena JM; Rastrojo A; Garde E; López MC; Thomas MC; Aguado B
Mol Biochem Parasitol; 2017 Mar; 212():9-15. PubMed ID: 28034676
[TBL] [Abstract][Full Text] [Related]
9. In Vivo Tethering System to Isolate RNA-Binding Proteins Regulating mRNA Decay in Leishmania.
Azizi H; Papadopoulou B
Methods Mol Biol; 2020; 2116():325-338. PubMed ID: 32221929
[TBL] [Abstract][Full Text] [Related]
10. The SIDER2 elements, interspersed repeated sequences that populate the Leishmania genomes, constitute subfamilies showing chromosomal proximity relationship.
Requena JM; Folgueira C; López MC; Thomas MC
BMC Genomics; 2008 Jun; 9():263. PubMed ID: 18518959
[TBL] [Abstract][Full Text] [Related]
11. Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.
Bringaud F; Müller M; Cerqueira GC; Smith M; Rochette A; El-Sayed NM; Papadopoulou B; Ghedin E
PLoS Pathog; 2007 Sep; 3(9):1291-307. PubMed ID: 17907803
[TBL] [Abstract][Full Text] [Related]
12. Application of ligation-mediated reverse transcription polymerase chain reaction to the identification of in vivo endonuclease-generated messenger RNA decay intermediates.
Hanson MN; Schoenberg DR
Methods Mol Biol; 2004; 257():213-22. PubMed ID: 14770008
[TBL] [Abstract][Full Text] [Related]
13. Stage-independent splicing of transcripts two heterogeneous neighboring genes in Leishmania amazonensis.
Kawazu S; Lu HG; Chang KP
Gene; 1997 Sep; 196(1-2):49-59. PubMed ID: 9322740
[TBL] [Abstract][Full Text] [Related]
14. Dataset for distribution of SIDER2 elements in the
Requena JM; Rastrojo A; Garde E; López MC; Thomas MC; Aguado B
Data Brief; 2017 Apr; 11():39-43. PubMed ID: 28127581
[TBL] [Abstract][Full Text] [Related]
15. RNA-seq approaches for determining mRNA abundance in Leishmania.
Haydock A; Terrao M; Sekar A; Ramasamy G; Baugh L; Myler PJ
Methods Mol Biol; 2015; 1201():207-19. PubMed ID: 25388116
[TBL] [Abstract][Full Text] [Related]
16. Identification and analysis of ingi-related retroposons in the trypanosomatid genomes.
Bringaud F; Rogers M; Ghedin E
Methods Mol Biol; 2015; 1201():109-22. PubMed ID: 25388110
[TBL] [Abstract][Full Text] [Related]
17. Sensitive detection of mRNA decay products by use of reverse-ligation-mediated PCR (RL-PCR).
Grange T
Methods Enzymol; 2008; 448():445-66. PubMed ID: 19111189
[TBL] [Abstract][Full Text] [Related]
18. Examining the influence of microRNAs on translation efficiency and on mRNA deadenylation and decay.
Wu L; Belasco JG
Methods Enzymol; 2008; 449():373-93. PubMed ID: 19215768
[TBL] [Abstract][Full Text] [Related]
19. The role of RNA chaperone Hfq in poly(A) metabolism methods to determine positions, abundance, and lengths of short oligo(A) tails.
Régnier P; Hajnsdorf E
Methods Enzymol; 2008; 447():161-81. PubMed ID: 19161843
[TBL] [Abstract][Full Text] [Related]
20. Chapter 5. In vivo analysis of the decay of transcripts generated by cytoplasmic RNA viruses.
Garneau NL; Wilusz CJ; Wilusz J
Methods Enzymol; 2008; 449():97-123. PubMed ID: 19215755
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]