164 related articles for article (PubMed ID: 25392405)
1. Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR).
Peng X; Thierry-Mieg J; Thierry-Mieg D; Nishida A; Pipes L; Bozinoski M; Thomas MJ; Kelly S; Weiss JM; Raveendran M; Muzny D; Gibbs RA; Rogers J; Schroth GP; Katze MG; Mason CE
Nucleic Acids Res; 2015 Jan; 43(Database issue):D737-42. PubMed ID: 25392405
[TBL] [Abstract][Full Text] [Related]
2. The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics.
Pipes L; Li S; Bozinoski M; Palermo R; Peng X; Blood P; Kelly S; Weiss JM; Thierry-Mieg J; Thierry-Mieg D; Zumbo P; Chen R; Schroth GP; Mason CE; Katze MG
Nucleic Acids Res; 2013 Jan; 41(Database issue):D906-14. PubMed ID: 23203872
[TBL] [Abstract][Full Text] [Related]
3. A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification.
Zhao S; Zhang B
BMC Genomics; 2015 Feb; 16(1):97. PubMed ID: 25765860
[TBL] [Abstract][Full Text] [Related]
4. An RNA-Seq-based reference transcriptome for Citrus.
Terol J; Tadeo F; Ventimilla D; Talon M
Plant Biotechnol J; 2016 Mar; 14(3):938-50. PubMed ID: 26261026
[TBL] [Abstract][Full Text] [Related]
5. Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes.
Ockendon NF; O'Connell LA; Bush SJ; Monzón-Sandoval J; Barnes H; Székely T; Hofmann HA; Dorus S; Urrutia AO
Mol Ecol Resour; 2016 Mar; 16(2):446-58. PubMed ID: 26358618
[TBL] [Abstract][Full Text] [Related]
6. Transcriptome reconstruction and annotation of cynomolgus and African green monkey.
Lee A; Khiabanian H; Kugelman J; Elliott O; Nagle E; Yu GY; Warren T; Palacios G; Rabadan R
BMC Genomics; 2014 Oct; 15(1):846. PubMed ID: 25277458
[TBL] [Abstract][Full Text] [Related]
7. Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis.
Davidson NM; Oshlack A
Gigascience; 2018 May; 7(5):. PubMed ID: 29722876
[TBL] [Abstract][Full Text] [Related]
8. Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys.
Proffitt JM; Glenn J; Cesnik AJ; Jadhav A; Shortreed MR; Smith LM; Kavanagh K; Cox LA; Olivier M
BMC Genomics; 2017 Nov; 18(1):877. PubMed ID: 29132314
[TBL] [Abstract][Full Text] [Related]
9. Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures.
Pollier J; Rombauts S; Goossens A
Methods Mol Biol; 2013; 1011():305-15. PubMed ID: 23616006
[TBL] [Abstract][Full Text] [Related]
10. Tissue resolved, gene structure refined equine transcriptome.
Mansour TA; Scott EY; Finno CJ; Bellone RR; Mienaltowski MJ; Penedo MC; Ross PJ; Valberg SJ; Murray JD; Brown CT
BMC Genomics; 2017 Jan; 18(1):103. PubMed ID: 28107812
[TBL] [Abstract][Full Text] [Related]
11. Designing a transcriptome next-generation sequencing project for a nonmodel plant species.
Strickler SR; Bombarely A; Mueller LA
Am J Bot; 2012 Feb; 99(2):257-66. PubMed ID: 22268224
[TBL] [Abstract][Full Text] [Related]
12. Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq.
Xu J; Su Z; Hong H; Thierry-Mieg J; Thierry-Mieg D; Kreil DP; Mason CE; Tong W; Shi L
Sci Data; 2014; 1():140020. PubMed ID: 25977777
[TBL] [Abstract][Full Text] [Related]
13. eSnail: A transcriptome-based molecular resource of the central nervous system for terrestrial gastropods.
Zhao M; Wang T; Stewart MJ; Bose U; Suwansa-Ard S; Storey KB; Cummins SF
Mol Ecol Resour; 2018 Jan; 18(1):147-158. PubMed ID: 28960889
[TBL] [Abstract][Full Text] [Related]
14. Exploring the transcriptome space of a recombinant BHK cell line through next generation sequencing.
Johnson KC; Yongky A; Vishwanathan N; Jacob NM; Jayapal KP; Goudar CT; Karypis G; Hu WS
Biotechnol Bioeng; 2014 Apr; 111(4):770-81. PubMed ID: 24249083
[TBL] [Abstract][Full Text] [Related]
15. De novo transcriptome assembly of a fern, Lygodium japonicum, and a web resource database, Ljtrans DB.
Aya K; Kobayashi M; Tanaka J; Ohyanagi H; Suzuki T; Yano K; Takano T; Yano K; Matsuoka M
Plant Cell Physiol; 2015 Jan; 56(1):e5. PubMed ID: 25480117
[TBL] [Abstract][Full Text] [Related]
16. Evolutionary annotation of conserved long non-coding RNAs in major mammalian species.
Bu D; Luo H; Jiao F; Fang S; Tan C; Liu Z; Zhao Y
Sci China Life Sci; 2015 Aug; 58(8):787-98. PubMed ID: 26117828
[TBL] [Abstract][Full Text] [Related]
17. Comprehensive RNA-Seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats.
Yu Y; Zhao C; Su Z; Wang C; Fuscoe JC; Tong W; Shi L
Sci Data; 2014; 1():140013. PubMed ID: 25977771
[TBL] [Abstract][Full Text] [Related]
18. Leveraging human genomic information to identify nonhuman primate sequences for expression array development.
Spindel ER; Pauley MA; Jia Y; Gravett C; Thompson SL; Boyle NF; Ojeda SR; Norgren RB
BMC Genomics; 2005 Nov; 6():160. PubMed ID: 16288651
[TBL] [Abstract][Full Text] [Related]
19. The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.
Cerqueira GC; Arnaud MB; Inglis DO; Skrzypek MS; Binkley G; Simison M; Miyasato SR; Binkley J; Orvis J; Shah P; Wymore F; Sherlock G; Wortman JR
Nucleic Acids Res; 2014 Jan; 42(Database issue):D705-10. PubMed ID: 24194595
[TBL] [Abstract][Full Text] [Related]
20. Species-specific exon loss in human transcriptomes.
Wang J; Lu ZX; Tokheim CJ; Miller SE; Xing Y
Mol Biol Evol; 2015 Feb; 32(2):481-94. PubMed ID: 25398629
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]