These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

206 related articles for article (PubMed ID: 25398208)

  • 21. kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.
    Jiang P; Luo J; Wang Y; Deng P; Schmidt B; Tang X; Chen N; Wong L; Zhao L
    Bioinformatics; 2019 Dec; 35(23):4871-4878. PubMed ID: 31038666
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers.
    Liu Y; Zhang LY; Li J
    Bioinformatics; 2019 Nov; 35(22):4560-4567. PubMed ID: 30994891
    [TBL] [Abstract][Full Text] [Related]  

  • 23. These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure.
    Zhang Q; Pell J; Canino-Koning R; Howe AC; Brown CT
    PLoS One; 2014; 9(7):e101271. PubMed ID: 25062443
    [TBL] [Abstract][Full Text] [Related]  

  • 24. KmerStream: streaming algorithms for k-mer abundance estimation.
    Melsted P; Halldórsson BV
    Bioinformatics; 2014 Dec; 30(24):3541-7. PubMed ID: 25355787
    [TBL] [Abstract][Full Text] [Related]  

  • 25. BLESS 2: accurate, memory-efficient and fast error correction method.
    Heo Y; Ramachandran A; Hwu WM; Ma J; Chen D
    Bioinformatics; 2016 Aug; 32(15):2369-71. PubMed ID: 27153708
    [TBL] [Abstract][Full Text] [Related]  

  • 26. An introduction to high-throughput sequencing experiments: design and bioinformatics analysis.
    Normand R; Yanai I
    Methods Mol Biol; 2013; 1038():1-26. PubMed ID: 23872966
    [TBL] [Abstract][Full Text] [Related]  

  • 27. kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections.
    Lemane T; Medvedev P; Chikhi R; Peterlongo P
    Bioinform Adv; 2022; 2(1):vbac029. PubMed ID: 36699393
    [TBL] [Abstract][Full Text] [Related]  

  • 28. DNA Bloom Filter enables anti-contamination and file version control for DNA-based data storage.
    Li Y; Zhang H; Chen Y; Shen Y; Ping Z
    Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38555478
    [TBL] [Abstract][Full Text] [Related]  

  • 29. EDAR: an efficient error detection and removal algorithm for next generation sequencing data.
    Zhao X; Palmer LE; Bolanos R; Mircean C; Fasulo D; Wittenberg GM
    J Comput Biol; 2010 Nov; 17(11):1549-60. PubMed ID: 20973743
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Mining statistically-solid k-mers for accurate NGS error correction.
    Zhao L; Xie J; Bai L; Chen W; Wang M; Zhang Z; Wang Y; Zhao Z; Li J
    BMC Genomics; 2018 Dec; 19(Suppl 10):912. PubMed ID: 30598110
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads.
    Song L; Florea L
    Gigascience; 2015; 4():48. PubMed ID: 26500767
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Filtering Next-Generation Sequencing of the Ig Gene Repertoire Data Using Antibody Structural Information.
    Kovaltsuk A; Krawczyk K; Kelm S; Snowden J; Deane CM
    J Immunol; 2018 Dec; 201(12):3694-3704. PubMed ID: 30397033
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.
    Zhou S; Jones C; Mieczkowski P; Swanstrom R
    J Virol; 2015 Aug; 89(16):8540-55. PubMed ID: 26041299
    [TBL] [Abstract][Full Text] [Related]  

  • 34. LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly.
    Bonizzoni P; Vedova GD; Pirola Y; Previtali M; Rizzi R
    J Comput Biol; 2016 Mar; 23(3):137-49. PubMed ID: 26953874
    [TBL] [Abstract][Full Text] [Related]  

  • 35. RF: a method for filtering short reads with tandem repeats for genome mapping.
    Misawa K
    Genomics; 2013 Jul; 102(1):35-7. PubMed ID: 23542167
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Analysis of computational footprinting methods for DNase sequencing experiments.
    Gusmao EG; Allhoff M; Zenke M; Costa IG
    Nat Methods; 2016 Apr; 13(4):303-9. PubMed ID: 26901649
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Computational methods for epigenetic analysis: the protocol of computational analysis for modified methylation-specific digital karyotyping based on massively parallel sequencing.
    Li J; Zhao Q; Bolund L
    Methods Mol Biol; 2011; 791():313-28. PubMed ID: 21913089
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Evaluation of a new NGS method based on a custom AmpliSeq library and Ion Torrent PGM sequencing for the fast detection of genetic variations in cardiomyopathies.
    Millat G; Chanavat V; Rousson R
    Clin Chim Acta; 2014 Jun; 433():266-71. PubMed ID: 24721642
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies.
    Puente-Sánchez F; Aguirre J; Parro V
    Nucleic Acids Res; 2016 Feb; 44(4):e40. PubMed ID: 26553806
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
    Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.