163 related articles for article (PubMed ID: 25399029)
1. E-MEM: efficient computation of maximal exact matches for very large genomes.
Khiste N; Ilie L
Bioinformatics; 2015 Feb; 31(4):509-14. PubMed ID: 25399029
[TBL] [Abstract][Full Text] [Related]
2. A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.
Khan Z; Bloom JS; Kruglyak L; Singh M
Bioinformatics; 2009 Jul; 25(13):1609-16. PubMed ID: 19389736
[TBL] [Abstract][Full Text] [Related]
3. andi: fast and accurate estimation of evolutionary distances between closely related genomes.
Haubold B; Klötzl F; Pfaffelhuber P
Bioinformatics; 2015 Apr; 31(8):1169-75. PubMed ID: 25504847
[TBL] [Abstract][Full Text] [Related]
4. copMEM: finding maximal exact matches via sampling both genomes.
Grabowski S; Bieniecki W
Bioinformatics; 2019 Feb; 35(4):677-678. PubMed ID: 30060142
[TBL] [Abstract][Full Text] [Related]
5. SpEED: fast computation of sensitive spaced seeds.
Ilie L; Ilie S; Bigvand AM
Bioinformatics; 2011 Sep; 27(17):2433-4. PubMed ID: 21690104
[TBL] [Abstract][Full Text] [Related]
6. slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array.
Fernandes F; Freitas AT
Bioinformatics; 2014 Feb; 30(4):464-71. PubMed ID: 24336412
[TBL] [Abstract][Full Text] [Related]
7. SAGE2: parallel human genome assembly.
Molnar M; Haghshenas E; Ilie L
Bioinformatics; 2018 Feb; 34(4):678-680. PubMed ID: 29045591
[TBL] [Abstract][Full Text] [Related]
8. WindowMasker: window-based masker for sequenced genomes.
Morgulis A; Gertz EM; Schäffer AA; Agarwala R
Bioinformatics; 2006 Jan; 22(2):134-41. PubMed ID: 16287941
[TBL] [Abstract][Full Text] [Related]
9. Pairwise alignment of nucleotide sequences using maximal exact matches.
Bayat A; Gaëta B; Ignjatovic A; Parameswaran S
BMC Bioinformatics; 2019 May; 20(1):261. PubMed ID: 31113356
[TBL] [Abstract][Full Text] [Related]
10. Linear-time computation of minimal absent words using suffix array.
Barton C; Heliou A; Mouchard L; Pissis SP
BMC Bioinformatics; 2014 Dec; 15(1):388. PubMed ID: 25526884
[TBL] [Abstract][Full Text] [Related]
11. Efficient estimation of pairwise distances between genomes.
Domazet-Loso M; Haubold B
Bioinformatics; 2009 Dec; 25(24):3221-7. PubMed ID: 19825795
[TBL] [Abstract][Full Text] [Related]
12. Finding Maximal Exact Matches Using the r-Index.
Rossi M; Oliva M; Bonizzoni P; Langmead B; Gagie T; Boucher C
J Comput Biol; 2022 Feb; 29(2):188-194. PubMed ID: 35041518
[TBL] [Abstract][Full Text] [Related]
13. MONI: A Pangenomic Index for Finding Maximal Exact Matches.
Rossi M; Oliva M; Langmead B; Gagie T; Boucher C
J Comput Biol; 2022 Feb; 29(2):169-187. PubMed ID: 35041495
[TBL] [Abstract][Full Text] [Related]
14. GAME: a simple and efficient whole genome alignment method using maximal exact match filtering.
Choi JH; Cho HG; Kim S
Comput Biol Chem; 2005 Jun; 29(3):244-53. PubMed ID: 15979044
[TBL] [Abstract][Full Text] [Related]
15. copMEM2: robust and scalable maximum exact match finding.
Grabowski S; Bieniecki W
Bioinformatics; 2023 May; 39(5):. PubMed ID: 37171886
[TBL] [Abstract][Full Text] [Related]
16. Finding anchors for genomic sequence comparison.
Lippert RA; Zhao X; Florea L; Mobarry C; Istrail S
J Comput Biol; 2005; 12(6):762-76. PubMed ID: 16108715
[TBL] [Abstract][Full Text] [Related]
17. FMtree: a fast locating algorithm of FM-indexes for genomic data.
Cheng H; Wu M; Xu Y
Bioinformatics; 2018 Feb; 34(3):416-424. PubMed ID: 28968761
[TBL] [Abstract][Full Text] [Related]
18. HiTEC: accurate error correction in high-throughput sequencing data.
Ilie L; Fazayeli F; Ilie S
Bioinformatics; 2011 Feb; 27(3):295-302. PubMed ID: 21115437
[TBL] [Abstract][Full Text] [Related]
19. Space efficient computation of rare maximal exact matches between multiple sequences.
Ohlebusch E; Kurtz S
J Comput Biol; 2008 May; 15(4):357-77. PubMed ID: 18361760
[TBL] [Abstract][Full Text] [Related]
20. Fast and accurate phylogeny reconstruction using filtered spaced-word matches.
Leimeister CA; Sohrabi-Jahromi S; Morgenstern B
Bioinformatics; 2017 Apr; 33(7):971-979. PubMed ID: 28073754
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]