These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 25416617)

  • 1. Correlation of chemical shifts predicted by molecular dynamics simulations for partially disordered proteins.
    Karp JM; Eryilmaz E; Cowburn D
    J Biomol NMR; 2015 Jan; 61(1):35-45. PubMed ID: 25416617
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Molecular Dynamics Simulations Combined with Nuclear Magnetic Resonance and/or Small-Angle X-ray Scattering Data for Characterizing Intrinsically Disordered Protein Conformational Ensembles.
    Chan-Yao-Chong M; Durand D; Ha-Duong T
    J Chem Inf Model; 2019 May; 59(5):1743-1758. PubMed ID: 30840442
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Combining NMR ensembles and molecular dynamics simulations provides more realistic models of protein structures in solution and leads to better chemical shift prediction.
    Lehtivarjo J; Tuppurainen K; Hassinen T; Laatikainen R; Peräkylä M
    J Biomol NMR; 2012 Mar; 52(3):257-67. PubMed ID: 22314705
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Interpreting protein structural dynamics from NMR chemical shifts.
    Robustelli P; Stafford KA; Palmer AG
    J Am Chem Soc; 2012 Apr; 134(14):6365-74. PubMed ID: 22381384
    [TBL] [Abstract][Full Text] [Related]  

  • 5. 4D prediction of protein (1)H chemical shifts.
    Lehtivarjo J; Hassinen T; Korhonen SP; Peräkylä M; Laatikainen R
    J Biomol NMR; 2009 Dec; 45(4):413-26. PubMed ID: 19876601
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PPM: a side-chain and backbone chemical shift predictor for the assessment of protein conformational ensembles.
    Li DW; Brüschweiler R
    J Biomol NMR; 2012 Nov; 54(3):257-65. PubMed ID: 22972619
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mapping of protein structural ensembles by chemical shifts.
    Baskaran K; Brunner K; Munte CE; Kalbitzer HR
    J Biomol NMR; 2010 Oct; 48(2):71-83. PubMed ID: 20680402
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Enhanced conformational space sampling improves the prediction of chemical shifts in proteins.
    Markwick PR; Cervantes CF; Abel BL; Komives EA; Blackledge M; McCammon JA
    J Am Chem Soc; 2010 Feb; 132(4):1220-1. PubMed ID: 20063881
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Quantum Chemical Calculations of NMR Chemical Shifts in Phosphorylated Intrinsically Disordered Proteins.
    Pavlíková Přecechtělová J; Mládek A; Zapletal V; Hritz J
    J Chem Theory Comput; 2019 Oct; 15(10):5642-5658. PubMed ID: 31487161
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessment of the use of NMR chemical shifts as replica-averaged structural restraints in molecular dynamics simulations to characterize the dynamics of proteins.
    Camilloni C; Cavalli A; Vendruscolo M
    J Phys Chem B; 2013 Feb; 117(6):1838-43. PubMed ID: 23327201
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Enhancing Biomolecular Simulations with Hybrid Potentials Incorporating NMR Data.
    Qi G; Vrettas MD; Biancaniello C; Sanz-Hernandez M; Cafolla CT; Morgan JWR; Wang Y; De Simone A; Wales DJ
    J Chem Theory Comput; 2022 Dec; 18(12):7733-7750. PubMed ID: 36395419
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using NMR chemical shifts as structural restraints in molecular dynamics simulations of proteins.
    Robustelli P; Kohlhoff K; Cavalli A; Vendruscolo M
    Structure; 2010 Aug; 18(8):923-33. PubMed ID: 20696393
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The PROSECCO server for chemical shift predictions in ordered and disordered proteins.
    Sanz-Hernández M; De Simone A
    J Biomol NMR; 2017 Nov; 69(3):147-156. PubMed ID: 29119515
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Maximizing accuracy of RNA structure in refinement against residual dipolar couplings.
    Bergonzo C; Grishaev A
    J Biomol NMR; 2019 Apr; 73(3-4):117-139. PubMed ID: 31049778
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Defining conformational ensembles of intrinsically disordered and partially folded proteins directly from chemical shifts.
    Jensen MR; Salmon L; Nodet G; Blackledge M
    J Am Chem Soc; 2010 Feb; 132(4):1270-2. PubMed ID: 20063887
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Heterogeneous dynamics in partially disordered proteins.
    Virtanen SI; Kiirikki AM; Mikula KM; Iwaï H; Ollila OHS
    Phys Chem Chem Phys; 2020 Sep; 22(37):21185-21196. PubMed ID: 32929427
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Conformational propensities of intrinsically disordered proteins from NMR chemical shifts.
    Kragelj J; Ozenne V; Blackledge M; Jensen MR
    Chemphyschem; 2013 Sep; 14(13):3034-45. PubMed ID: 23794453
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ensemble MD simulations restrained via crystallographic data: accurate structure leads to accurate dynamics.
    Xue Y; Skrynnikov NR
    Protein Sci; 2014 Apr; 23(4):488-507. PubMed ID: 24452989
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improved chemical shift prediction by Rosetta conformational sampling.
    Tian Y; Opella SJ; Marassi FM
    J Biomol NMR; 2012 Nov; 54(3):237-43. PubMed ID: 23007199
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Full structural ensembles of intrinsically disordered proteins from unbiased molecular dynamics simulations.
    Shrestha UR; Smith JC; Petridis L
    Commun Biol; 2021 Feb; 4(1):243. PubMed ID: 33623120
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.