630 related articles for article (PubMed ID: 25417205)
1. QuasR: quantification and annotation of short reads in R.
Gaidatzis D; Lerch A; Hahne F; Stadler MB
Bioinformatics; 2015 Apr; 31(7):1130-2. PubMed ID: 25417205
[TBL] [Abstract][Full Text] [Related]
2. esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.
Wei Z; Zhang W; Fang H; Li Y; Wang X
Bioinformatics; 2018 Aug; 34(15):2664-2665. PubMed ID: 29522192
[TBL] [Abstract][Full Text] [Related]
3. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization.
Yu G; Wang LG; He QY
Bioinformatics; 2015 Jul; 31(14):2382-3. PubMed ID: 25765347
[TBL] [Abstract][Full Text] [Related]
4. Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data.
Wang B; Cunningham JM; Yang XH
Bioinformatics; 2015 Sep; 31(18):3043-5. PubMed ID: 25979472
[TBL] [Abstract][Full Text] [Related]
5. VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.
Obenchain V; Lawrence M; Carey V; Gogarten S; Shannon P; Morgan M
Bioinformatics; 2014 Jul; 30(14):2076-8. PubMed ID: 24681907
[TBL] [Abstract][Full Text] [Related]
6. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
Ou J; Liu H; Yu J; Kelliher MA; Castilla LH; Lawson ND; Zhu LJ
BMC Genomics; 2018 Mar; 19(1):169. PubMed ID: 29490630
[TBL] [Abstract][Full Text] [Related]
7. compendiumdb: an R package for retrieval and storage of functional genomics data.
Nandal UK; van Kampen AH; Moerland PD
Bioinformatics; 2016 Sep; 32(18):2856-7. PubMed ID: 27323392
[TBL] [Abstract][Full Text] [Related]
8. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
[TBL] [Abstract][Full Text] [Related]
9. R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data.
Klein HU; Bartenhagen C; Kohlmann A; Grossmann V; Ruckert C; Haferlach T; Dugas M
Bioinformatics; 2011 Apr; 27(8):1162-3. PubMed ID: 21349869
[TBL] [Abstract][Full Text] [Related]
10. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
Wilton R; Li X; Feinberg AP; Szalay AS
Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
[TBL] [Abstract][Full Text] [Related]
11. Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads.
Toedling J; Ciaudo C; Voinnet O; Heard E; Barillot E
Bioinformatics; 2010 Nov; 26(22):2902-3. PubMed ID: 20861030
[TBL] [Abstract][Full Text] [Related]
12. ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.
Morgan M; Anders S; Lawrence M; Aboyoun P; Pagès H; Gentleman R
Bioinformatics; 2009 Oct; 25(19):2607-8. PubMed ID: 19654119
[TBL] [Abstract][Full Text] [Related]
13. Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data.
Walter C; Schuetzmann D; Rosenbauer F; Dugas M
Bioinformatics; 2014 Nov; 30(22):3268-9. PubMed ID: 25078398
[TBL] [Abstract][Full Text] [Related]
14. TSSi--an R package for transcription start site identification from 5' mRNA tag data.
Kreutz C; Gehring JS; Lang D; Reski R; Timmer J; Rensing SA
Bioinformatics; 2012 Jun; 28(12):1641-2. PubMed ID: 22513994
[TBL] [Abstract][Full Text] [Related]
15. A ChIP-Seq Data Analysis Pipeline Based on Bioconductor Packages.
Park SJ; Kim JH; Yoon BH; Kim SY
Genomics Inform; 2017 Mar; 15(1):11-18. PubMed ID: 28416945
[TBL] [Abstract][Full Text] [Related]
16. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
Gu Z; Eils R; Schlesner M
Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599
[TBL] [Abstract][Full Text] [Related]
17. scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data.
Wang Z; Hu J; Johnson WE; Campbell JD
BMC Bioinformatics; 2019 May; 20(1):222. PubMed ID: 31046658
[TBL] [Abstract][Full Text] [Related]
18. ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing.
Wong T; Deveson IW; Hardwick SA; Mercer TR
Bioinformatics; 2017 Jun; 33(11):1723-1724. PubMed ID: 28130232
[TBL] [Abstract][Full Text] [Related]
19. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA
BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212
[TBL] [Abstract][Full Text] [Related]
20. Pasha: a versatile R package for piling chromatin HTS data.
Fenouil R; Descostes N; Spinelli L; Koch F; Maqbool MA; Benoukraf T; Cauchy P; Innocenti C; Ferrier P; Andrau JC
Bioinformatics; 2016 Aug; 32(16):2528-30. PubMed ID: 27153642
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
