These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 25424655)

  • 1. Principal Component Analysis reveals correlation of cavities evolution and functional motions in proteins.
    Desdouits N; Nilges M; Blondel A
    J Mol Graph Model; 2015 Feb; 55():13-24. PubMed ID: 25424655
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Extended molecular dynamics simulation of the carbon monoxide migration in sperm whale myoglobin.
    Bossa C; Anselmi M; Roccatano D; Amadei A; Vallone B; Brunori M; Di Nola A
    Biophys J; 2004 Jun; 86(6):3855-62. PubMed ID: 15189882
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular dynamics simulation of sperm whale myoglobin: effects of mutations and trapped CO on the structure and dynamics of cavities.
    Bossa C; Amadei A; Daidone I; Anselmi M; Vallone B; Brunori M; Di Nola A
    Biophys J; 2005 Jul; 89(1):465-74. PubMed ID: 15849248
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Modulation of protein function by exogenous ligands in protein cavities: CO binding to a myoglobin cavity mutant containing unnatural proximal ligands.
    Decatur SM; DePillis GD; Boxer SG
    Biochemistry; 1996 Apr; 35(13):3925-32. PubMed ID: 8672423
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structural dynamics of myoglobin: spectroscopic and structural characterization of ligand docking sites in myoglobin mutant L29W.
    Nienhaus K; Deng P; Kriegl JM; Nienhaus GU
    Biochemistry; 2003 Aug; 42(32):9633-46. PubMed ID: 12911305
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural dynamics of myoglobin: effect of internal cavities on ligand migration and binding.
    Nienhaus K; Deng P; Kriegl JM; Nienhaus GU
    Biochemistry; 2003 Aug; 42(32):9647-58. PubMed ID: 12911306
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The effect of protein internal cavities on ligand migration and binding in myoglobin.
    Nienhaus K; Nienhaus GU
    Micron; 2004; 35(1-2):67-9. PubMed ID: 15036294
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Detection of internal cavities in globular proteins.
    Hubbard SJ; Argos P
    Protein Eng; 1995 Oct; 8(10):1011-5. PubMed ID: 8771181
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Interaction at a distance: Xenon migration in Mb.
    Turan HT; Boittier E; Meuwly M
    J Chem Phys; 2023 Mar; 158(12):125103. PubMed ID: 37003761
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Full correlation analysis of conformational protein dynamics.
    Lange OF; Grubmüller H
    Proteins; 2008 Mar; 70(4):1294-312. PubMed ID: 17876828
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Kinetic proofreading by the cavity system of myoglobin: protection from poisoning.
    Radding W; Phillips GN
    Bioessays; 2004 Apr; 26(4):422-33. PubMed ID: 15057940
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Unveiling functional protein motions with picosecond x-ray crystallography and molecular dynamics simulations.
    Hummer G; Schotte F; Anfinrud PA
    Proc Natl Acad Sci U S A; 2004 Oct; 101(43):15330-4. PubMed ID: 15489270
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Accessibility to internal cavities and ligand binding sites monitored by protein crystallographic thermal factors.
    Carugo O; Argos P
    Proteins; 1998 May; 31(2):201-13. PubMed ID: 9593193
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Myoglobin cavities provide interior ligand pathway.
    Teeter MM
    Protein Sci; 2004 Feb; 13(2):313-8. PubMed ID: 14739317
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation of intrinsic compressibility of proteins by molecular dynamics simulation.
    Mori K; Seki Y; Yamada Y; Matsumoto H; Soda K
    J Chem Phys; 2006 Aug; 125(5):054903. PubMed ID: 16942254
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme.
    Quillin ML; Breyer WA; Griswold IJ; Matthews BW
    J Mol Biol; 2000 Sep; 302(4):955-77. PubMed ID: 10993735
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Local feature analysis: a statistical theory for reproducible essential dynamics of large macromolecules.
    Zhang Z; Wriggers W
    Proteins; 2006 Aug; 64(2):391-403. PubMed ID: 16700056
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Two-step relaxation mode analysis with multiple evolution times applied to all-atom molecular dynamics protein simulation.
    Karasawa N; Mitsutake A; Takano H
    Phys Rev E; 2017 Dec; 96(6-1):062408. PubMed ID: 29347325
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Distal cavity fluctuations in myoglobin: protein motion and ligand diffusion.
    Carlson ML; Regan RM; Gibson QH
    Biochemistry; 1996 Jan; 35(4):1125-36. PubMed ID: 8573567
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Restricted rotational motion of CO in a protein internal cavity: evidence for nonseparating correlation functions from IR pump-probe spectroscopy.
    Helbing J; Nienhaus K; Nienhaus GU; Hamm P
    J Chem Phys; 2005 Mar; 122(12):124505. PubMed ID: 15836395
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.