These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

121 related articles for article (PubMed ID: 25424660)

  • 1. Secondary structure assignment for conformationally irregular peptides: comparison between DSSP, STRIDE and KAKSI.
    Zhang Y; Sagui C
    J Mol Graph Model; 2015 Feb; 55():72-84. PubMed ID: 25424660
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.
    Martin J; Letellier G; Marin A; Taly JF; de Brevern AG; Gibrat JF
    BMC Struct Biol; 2005 Sep; 5():17. PubMed ID: 16164759
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Knowledge-based protein secondary structure assignment.
    Frishman D; Argos P
    Proteins; 1995 Dec; 23(4):566-79. PubMed ID: 8749853
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Assessing secondary structure assignment of protein structures by using pairwise sequence-alignment benchmarks.
    Zhang W; Dunker AK; Zhou Y
    Proteins; 2008 Apr; 71(1):61-7. PubMed ID: 17932927
    [TBL] [Abstract][Full Text] [Related]  

  • 5. [A turning point in the knowledge of the structure-function-activity relations of elastin].
    Alix AJ
    J Soc Biol; 2001; 195(2):181-93. PubMed ID: 11727705
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A New Secondary Structure Assignment Algorithm Using Cα Backbone Fragments.
    Cao C; Wang G; Liu A; Xu S; Wang L; Zou S
    Int J Mol Sci; 2016 Mar; 17(3):333. PubMed ID: 26978354
    [TBL] [Abstract][Full Text] [Related]  

  • 7. STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins.
    Heinig M; Frishman D
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W500-2. PubMed ID: 15215436
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SABA (secondary structure assignment program based on only alpha carbons): a novel pseudo center geometrical criterion for accurate assignment of protein secondary structures.
    Park SY; Yoo MJ; Shin J; Cho KH
    BMB Rep; 2011 Feb; 44(2):118-22. PubMed ID: 21345311
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SCOT: Rethinking the classification of secondary structure elements.
    Brinkjost T; Ehrt C; Koch O; Mutzel P
    Bioinformatics; 2020 Apr; 36(8):2417-2428. PubMed ID: 31742326
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S; Saven JG
    Proteins; 2005 Aug; 60(3):450-63. PubMed ID: 15937899
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Protein secondary structure classification revisited: processing DSSP information with PSSC.
    Zacharias J; Knapp EW
    J Chem Inf Model; 2014 Jul; 54(7):2166-79. PubMed ID: 24866861
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A comparative study of two different force fields on structural and thermodynamics character of H1 peptide via molecular dynamics simulations.
    Cao Z; Wang J
    J Biomol Struct Dyn; 2010 Apr; 27(5):651-61. PubMed ID: 20085382
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Gabapentin: a stereochemically constrained gamma amino acid residue in hybrid peptide design.
    Vasudev PG; Chatterjee S; Shamala N; Balaram P
    Acc Chem Res; 2009 Oct; 42(10):1628-39. PubMed ID: 19572698
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular dynamics simulations of beta-turn forming tetra- and hexapeptides.
    Borics A; Murphy RF; Lovas S
    J Biomol Struct Dyn; 2004 Jun; 21(6):761-70. PubMed ID: 15106998
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.
    Cao Z; Liu L; Wu P; Wang J
    Acta Biochim Biophys Sin (Shanghai); 2011 Mar; 43(3):172-80. PubMed ID: 21289072
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Crystal-state conformation of Calpha,alpha-dialkylated peptides containing chiral beta-homo-residues.
    Romanelli A; Garella I; Menchise V; Iacovino R; Saviano M; Montesarchio D; Didierjean C; Di Lello P; Rossi F; Benedetti E
    J Pept Sci; 2001 Jan; 7(1):15-26. PubMed ID: 11245201
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular dynamics simulations of polypeptide conformations in water: A comparison of alpha, beta, and poly(pro)II conformations.
    Sreerama N; Woody RW
    Proteins; 1999 Sep; 36(4):400-6. PubMed ID: 10450081
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Peptides of aminoxy acids as foldamers.
    Li X; Yang D
    Chem Commun (Camb); 2006 Aug; (32):3367-79. PubMed ID: 16896469
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Short hydrogen bonds in proteins.
    Rajagopal S; Vishveshwara S
    FEBS J; 2005 Apr; 272(8):1819-32. PubMed ID: 15819878
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Computer modeling of polyleucine-based coiled coil dimers in a realistic membrane environment: insight into helix-helix interactions in membrane proteins.
    Ash WL; Stockner T; MacCallum JL; Tieleman DP
    Biochemistry; 2004 Jul; 43(28):9050-60. PubMed ID: 15248762
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.