These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
249 related articles for article (PubMed ID: 25428372)
1. Ion distributions around left- and right-handed DNA and RNA duplexes: a comparative study. Pan F; Roland C; Sagui C Nucleic Acids Res; 2014 Dec; 42(22):13981-96. PubMed ID: 25428372 [TBL] [Abstract][Full Text] [Related]
2. Differential stability of DNA crossovers in solution mediated by divalent cations. Várnai P; Timsit Y Nucleic Acids Res; 2010 Jul; 38(12):4163-72. PubMed ID: 20215439 [TBL] [Abstract][Full Text] [Related]
3. Computational exploration of mobile ion distributions around RNA duplex. Kirmizialtin S; Elber R J Phys Chem B; 2010 Jun; 114(24):8207-20. PubMed ID: 20518549 [TBL] [Abstract][Full Text] [Related]
4. Conformation-dependent DNA attraction. Li W; Nordenskiöld L; Zhou R; Mu Y Nanoscale; 2014 Jun; 6(12):7085-92. PubMed ID: 24847505 [TBL] [Abstract][Full Text] [Related]
5. Effect of initial ion positions on the interactions of monovalent and divalent ions with a DNA duplex as revealed with atomistic molecular dynamics simulations. Robbins TJ; Wang Y J Biomol Struct Dyn; 2013; 31(11):1311-23. PubMed ID: 23153112 [TBL] [Abstract][Full Text] [Related]
6. RNA Captures More Cations than DNA: Insights from Molecular Dynamics Simulations. Cruz-León S; Schwierz N J Phys Chem B; 2022 Nov; 126(43):8646-8654. PubMed ID: 36260822 [TBL] [Abstract][Full Text] [Related]
7. Comparative melting and healing of B-DNA and Z-DNA by an infrared laser pulse. Man VH; Pan F; Sagui C; Roland C J Chem Phys; 2016 Apr; 144(14):145101. PubMed ID: 27083751 [TBL] [Abstract][Full Text] [Related]
8. Quantitative analysis of monovalent counterion binding to random-sequence, double-stranded DNA using the replacement ion method. Stellwagen E; Dong Q; Stellwagen NC Biochemistry; 2007 Feb; 46(7):2050-8. PubMed ID: 17253778 [TBL] [Abstract][Full Text] [Related]
9. Explicit ions/implicit water generalized Born model for nucleic acids. Tolokh IS; Thomas DG; Onufriev AV J Chem Phys; 2018 May; 148(19):195101. PubMed ID: 30307229 [TBL] [Abstract][Full Text] [Related]
10. Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes. Auffinger P; Westhof E J Mol Biol; 2001 Feb; 305(5):1057-72. PubMed ID: 11162114 [TBL] [Abstract][Full Text] [Related]
11. Diffusion NMR-based comparison of electrostatic influences of DNA on various monovalent cations. Yu B; Bien KG; Wang T; Iwahara J Biophys J; 2022 Sep; 121(18):3562-3570. PubMed ID: 35754184 [TBL] [Abstract][Full Text] [Related]
12. Similarities and Differences between RNA and DNA Double-Helical Structures in Circular Dichroism Spectroscopy: A SAC-CI Study. Miyahara T; Nakatsuji H; Sugiyama H J Phys Chem A; 2016 Nov; 120(45):9008-9018. PubMed ID: 27809523 [TBL] [Abstract][Full Text] [Related]
13. Effect of Monovalent Ion Parameters on Molecular Dynamics Simulations of G-Quadruplexes. Havrila M; Stadlbauer P; Islam B; Otyepka M; Šponer J J Chem Theory Comput; 2017 Aug; 13(8):3911-3926. PubMed ID: 28657760 [TBL] [Abstract][Full Text] [Related]
14. Competition among Li(+), Na(+), K(+), and Rb(+) monovalent ions for DNA in molecular dynamics simulations using the additive CHARMM36 and Drude polarizable force fields. Savelyev A; MacKerell AD J Phys Chem B; 2015 Mar; 119(12):4428-40. PubMed ID: 25751286 [TBL] [Abstract][Full Text] [Related]
15. Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions. El-Khoury R; Cabrero C; Movilla S; Kaur H; Friedland D; Domínguez A; Thorpe JD; Roman M; Orozco M; González C; Damha MJ Nucleic Acids Res; 2024 Jul; 52(13):7414-7428. PubMed ID: 38874502 [TBL] [Abstract][Full Text] [Related]
16. The effects of a neutral cosolute on the B to Z transition for DNA duplexes incorporating both CG and CA steps. Phromsiri P; Gerling RR; Blose JM Nucleosides Nucleotides Nucleic Acids; 2017 Nov; 36(11):690-703. PubMed ID: 29185909 [TBL] [Abstract][Full Text] [Related]
17. Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations. Owczarzy R; Moreira BG; You Y; Behlke MA; Walder JA Biochemistry; 2008 May; 47(19):5336-53. PubMed ID: 18422348 [TBL] [Abstract][Full Text] [Related]
18. Structural fluctuation observed in Z-DNA d(CGCGCG)₂ in the absence of divalent metal cations and polyamines. Chatake T J Synchrotron Radiat; 2013 Nov; 20(Pt 6):864-8. PubMed ID: 24121329 [TBL] [Abstract][Full Text] [Related]
19. Probing Ca2+-induced conformational changes in porcine calmodulin by H/D exchange and ESI-MS: effect of cations and ionic strength. Zhu MM; Rempel DL; Zhao J; Giblin DE; Gross ML Biochemistry; 2003 Dec; 42(51):15388-97. PubMed ID: 14690449 [TBL] [Abstract][Full Text] [Related]
20. Influence of Na+ and Mg2+ ions on RNA structures studied with molecular dynamics simulations. Fischer NM; Polêto MD; Steuer J; van der Spoel D Nucleic Acids Res; 2018 Jun; 46(10):4872-4882. PubMed ID: 29718375 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]