These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
597 related articles for article (PubMed ID: 25432719)
1. Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq. Barrick JE; Colburn G; Deatherage DE; Traverse CC; Strand MD; Borges JJ; Knoester DB; Reba A; Meyer AG BMC Genomics; 2014 Nov; 15(1):1039. PubMed ID: 25432719 [TBL] [Abstract][Full Text] [Related]
2. Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq. Deatherage DE; Traverse CC; Wolf LN; Barrick JE Front Genet; 2014; 5():468. PubMed ID: 25653667 [TBL] [Abstract][Full Text] [Related]
3. Detection of structural variants involving repetitive regions in the reference genome. Lee H; Popodi E; Foster PL; Tang H J Comput Biol; 2014 Mar; 21(3):219-33. PubMed ID: 24552580 [TBL] [Abstract][Full Text] [Related]
4. Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms. Bartenhagen C; Dugas M Brief Bioinform; 2016 Jan; 17(1):51-62. PubMed ID: 25998133 [TBL] [Abstract][Full Text] [Related]
5. Assessing the impact of exact reads on reducing the error rate of read mapping. Salari F; Zare-Mirakabad F; Sadeghi M; Rokni-Zadeh H BMC Bioinformatics; 2018 Nov; 19(1):406. PubMed ID: 30400807 [TBL] [Abstract][Full Text] [Related]
6. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Deatherage DE; Barrick JE Methods Mol Biol; 2014; 1151():165-88. PubMed ID: 24838886 [TBL] [Abstract][Full Text] [Related]
7. Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes. Studier FW; Daegelen P; Lenski RE; Maslov S; Kim JF J Mol Biol; 2009 Dec; 394(4):653-80. PubMed ID: 19765592 [TBL] [Abstract][Full Text] [Related]
8. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes. Uchiyama I; Higuchi T; Kobayashi I BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155 [TBL] [Abstract][Full Text] [Related]
9. McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data. Nelson MG; Linheiro RS; Bergman CM G3 (Bethesda); 2017 Aug; 7(8):2763-2778. PubMed ID: 28637810 [TBL] [Abstract][Full Text] [Related]
10. SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data. Chiara M; Pesole G; Horner DS Nucleic Acids Res; 2012 Oct; 40(18):e145. PubMed ID: 22735696 [TBL] [Abstract][Full Text] [Related]
12. ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data. Hawkey J; Hamidian M; Wick RR; Edwards DJ; Billman-Jacobe H; Hall RM; Holt KE BMC Genomics; 2015 Sep; 16(1):667. PubMed ID: 26336060 [TBL] [Abstract][Full Text] [Related]
13. iMGEins: detecting novel mobile genetic elements inserted in individual genomes. Bae J; Lee KW; Islam MN; Yim HS; Park H; Rho M BMC Genomics; 2018 Dec; 19(1):944. PubMed ID: 30563451 [TBL] [Abstract][Full Text] [Related]
14. MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping. Lee WP; Stromberg MP; Ward A; Stewart C; Garrison EP; Marth GT PLoS One; 2014; 9(3):e90581. PubMed ID: 24599324 [TBL] [Abstract][Full Text] [Related]
15. Discovery and genotyping of structural variation from long-read haploid genome sequence data. Huddleston J; Chaisson MJP; Steinberg KM; Warren W; Hoekzema K; Gordon D; Graves-Lindsay TA; Munson KM; Kronenberg ZN; Vives L; Peluso P; Boitano M; Chin CS; Korlach J; Wilson RK; Eichler EE Genome Res; 2017 May; 27(5):677-685. PubMed ID: 27895111 [TBL] [Abstract][Full Text] [Related]
16. Genomic Structural Variations Within Five Continental Populations of Long E; Evans C; Chaston J; Udall JA G3 (Bethesda); 2018 Oct; 8(10):3247-3253. PubMed ID: 30111620 [TBL] [Abstract][Full Text] [Related]
17. The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement. Weigand MR; Peng Y; Loparev V; Batra D; Bowden KE; Burroughs M; Cassiday PK; Davis JK; Johnson T; Juieng P; Knipe K; Mathis MH; Pruitt AM; Rowe L; Sheth M; Tondella ML; Williams MM J Bacteriol; 2017 Apr; 199(8):. PubMed ID: 28167525 [TBL] [Abstract][Full Text] [Related]
18. Rapid identification and mapping of insertion sequences in Escherichia coli genomes using vectorette PCR. Zhong S; Dean AM BMC Microbiol; 2004 Jul; 4():26. PubMed ID: 15242519 [TBL] [Abstract][Full Text] [Related]
19. Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. Raeside C; Gaffé J; Deatherage DE; Tenaillon O; Briska AM; Ptashkin RN; Cruveiller S; Médigue C; Lenski RE; Barrick JE; Schneider D mBio; 2014 Sep; 5(5):e01377-14. PubMed ID: 25205090 [TBL] [Abstract][Full Text] [Related]
20. Genome-Wide Abolishment of Mobile Genetic Elements Using Genome Shuffling and CRISPR/Cas-Assisted MAGE Allows the Efficient Stabilization of a Bacterial Chassis. Umenhoffer K; Draskovits G; Nyerges Á; Karcagi I; Bogos B; Tímár E; Csörgő B; Herczeg R; Nagy I; Fehér T; Pál C; Pósfai G ACS Synth Biol; 2017 Aug; 6(8):1471-1483. PubMed ID: 28426191 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]