600 related articles for article (PubMed ID: 25435401)
1. Mining diverse small RNA species in the deep transcriptome.
Vickers KC; Roteta LA; Hucheson-Dilks H; Han L; Guo Y
Trends Biochem Sci; 2015 Jan; 40(1):4-7. PubMed ID: 25435401
[TBL] [Abstract][Full Text] [Related]
2. Manatee: detection and quantification of small non-coding RNAs from next-generation sequencing data.
Handzlik JE; Tastsoglou S; Vlachos IS; Hatzigeorgiou AG
Sci Rep; 2020 Jan; 10(1):705. PubMed ID: 31959833
[TBL] [Abstract][Full Text] [Related]
3. Temperature-dependent sRNA transcriptome of the Lyme disease spirochete.
Popitsch N; Bilusic I; Rescheneder P; Schroeder R; Lybecker M
BMC Genomics; 2017 Jan; 18(1):28. PubMed ID: 28056764
[TBL] [Abstract][Full Text] [Related]
4. Ultra deep sequencing of Listeria monocytogenes sRNA transcriptome revealed new antisense RNAs.
Behrens S; Widder S; Mannala GK; Qing X; Madhugiri R; Kefer N; Abu Mraheil M; Rattei T; Hain T
PLoS One; 2014; 9(2):e83979. PubMed ID: 24498259
[TBL] [Abstract][Full Text] [Related]
5. The UEA Small RNA Workbench: A Suite of Computational Tools for Small RNA Analysis.
Mohorianu I; Stocks MB; Applegate CS; Folkes L; Moulton V
Methods Mol Biol; 2017; 1580():193-224. PubMed ID: 28439835
[TBL] [Abstract][Full Text] [Related]
6. Databases and resources for human small non-coding RNAs.
Agirre E; Eyras E
Hum Genomics; 2011 Mar; 5(3):192-9. PubMed ID: 21504869
[TBL] [Abstract][Full Text] [Related]
7. Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism.
van der Meulen SB; de Jong A; Kok J
RNA Biol; 2016; 13(3):353-66. PubMed ID: 26950529
[TBL] [Abstract][Full Text] [Related]
8. Identification and classification of small RNAs in transcriptome sequence data.
Langenberger D; Bermudez-Santana CI; Stadler PF; Hoffmann S
Pac Symp Biocomput; 2010; ():80-7. PubMed ID: 19908360
[TBL] [Abstract][Full Text] [Related]
9. Transcriptome sequencing analysis of novel sRNAs of Kineococcus radiotolerans in response to ionizing radiation.
Chen Z; Li L; Shan Z; Huang H; Chen H; Ding X; Guo J; Liu L
Microbiol Res; 2016 Nov; 192():122-129. PubMed ID: 27664730
[TBL] [Abstract][Full Text] [Related]
10. Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies.
Barquist L; Vogel J
Annu Rev Genet; 2015; 49():367-94. PubMed ID: 26473381
[TBL] [Abstract][Full Text] [Related]
11. CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data.
Mohorianu I; Stocks MB; Wood J; Dalmay T; Moulton V
RNA Biol; 2013 Jul; 10(7):1221-30. PubMed ID: 23851377
[TBL] [Abstract][Full Text] [Related]
12. De Novo Identification of sRNA Loci and Non-coding RNAs by High-Throughput Sequencing.
Lunardon A; Forestan C; Farinati S; Varotto S
Methods Mol Biol; 2018; 1675():297-314. PubMed ID: 29052198
[TBL] [Abstract][Full Text] [Related]
13. An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses.
Dos Santos TB; Soares JDM; Lima JE; Silva JC; Ivamoto ST; Baba VY; Souza SGH; Lorenzetti APR; Paschoal AR; Meda AR; Nishiyama Júnior MY; de Oliveira ÚC; Mokochinski JB; Guyot R; Junqueira-de-Azevedo ILM; Figueira AVO; Mazzafera P; Júnior OR; Vieira LGE; Pereira LFP; Domingues DS
Funct Integr Genomics; 2019 Jan; 19(1):151-169. PubMed ID: 30196429
[TBL] [Abstract][Full Text] [Related]
14. Small RNA-mediated regulation in bacteria: A growing palette of diverse mechanisms.
Dutta T; Srivastava S
Gene; 2018 May; 656():60-72. PubMed ID: 29501814
[TBL] [Abstract][Full Text] [Related]
15. Using machine learning and high-throughput RNA sequencing to classify the precursors of small non-coding RNAs.
Ryvkin P; Leung YY; Ungar LH; Gregory BD; Wang LS
Methods; 2014 May; 67(1):28-35. PubMed ID: 24145223
[TBL] [Abstract][Full Text] [Related]
16. A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.
Pantano L; Estivill X; Martí E
Bioinformatics; 2011 Nov; 27(22):3202-3. PubMed ID: 21976421
[TBL] [Abstract][Full Text] [Related]
17. Sample preparation for small RNA massive parallel sequencing.
Gommans WM; Berezikov E
Methods Mol Biol; 2012; 786():167-78. PubMed ID: 21938626
[TBL] [Abstract][Full Text] [Related]
18. Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing.
Wan LC; Wang F; Guo X; Lu S; Qiu Z; Zhao Y; Zhang H; Lin J
BMC Plant Biol; 2012 Aug; 12():146. PubMed ID: 22894611
[TBL] [Abstract][Full Text] [Related]
19. An automated approach for global identification of sRNA-encoding regions in RNA-Seq data from Mycobacterium tuberculosis.
Wang M; Fleming J; Li Z; Li C; Zhang H; Xue Y; Chen M; Zhang Z; Zhang XE; Bi L
Acta Biochim Biophys Sin (Shanghai); 2016 Jun; 48(6):544-53. PubMed ID: 27174874
[TBL] [Abstract][Full Text] [Related]
20. Dynamic expression of small RNA populations in larch (Larix leptolepis).
Zhang J; Wu T; Li L; Han S; Li X; Zhang S; Qi L
Planta; 2013 Jan; 237(1):89-101. PubMed ID: 22983700
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
