217 related articles for article (PubMed ID: 25437403)
1. Identifying key residues for protein allostery through rigid residue scan.
Kalescky R; Liu J; Tao P
J Phys Chem A; 2015 Mar; 119(9):1689-700. PubMed ID: 25437403
[TBL] [Abstract][Full Text] [Related]
2. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
Kalescky R; Zhou H; Liu J; Tao P
PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535
[TBL] [Abstract][Full Text] [Related]
3. Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.
Gerek ZN; Ozkan SB
PLoS Comput Biol; 2011 Oct; 7(10):e1002154. PubMed ID: 21998559
[TBL] [Abstract][Full Text] [Related]
4. Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps.
Hayatshahi HS; Ahuactzin E; Tao P; Wang S; Liu J
J Chem Inf Model; 2019 Nov; 59(11):4691-4705. PubMed ID: 31589429
[TBL] [Abstract][Full Text] [Related]
5. Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.
Allain A; Chauvot de Beauchêne I; Langenfeld F; Guarracino Y; Laine E; Tchertanov L
Faraday Discuss; 2014; 169():303-21. PubMed ID: 25340971
[TBL] [Abstract][Full Text] [Related]
6. Shedding light on protein-ligand binding by graph theory: the topological nature of allostery.
De Ruvo M; Giuliani A; Paci P; Santoni D; Di Paola L
Biophys Chem; 2012 May; 165-166():21-9. PubMed ID: 22464849
[TBL] [Abstract][Full Text] [Related]
7. Probing Allosteric Mechanism with Long-Range Rigidity Transmission Across Protein Networks.
Sljoka A
Methods Mol Biol; 2021; 2253():61-75. PubMed ID: 33315218
[TBL] [Abstract][Full Text] [Related]
8. Looking for a sequence based allostery definition: a statistical journey at different resolution scales.
Namboodiri S; Giuliani A; Nair AS; Dhar PK
J Theor Biol; 2012 Jul; 304():211-8. PubMed ID: 22484347
[TBL] [Abstract][Full Text] [Related]
9. Contrasting roles of dynamics in protein allostery: NMR and structural studies of CheY and the third PDZ domain from PSD-95.
Lee AL
Biophys Rev; 2015 Jun; 7(2):217-226. PubMed ID: 28510172
[TBL] [Abstract][Full Text] [Related]
10. Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle.
Tehver R; Chen J; Thirumalai D
J Mol Biol; 2009 Mar; 387(2):390-406. PubMed ID: 19121324
[TBL] [Abstract][Full Text] [Related]
11. Hidden electrostatic basis of dynamic allostery in a PDZ domain.
Kumawat A; Chakrabarty S
Proc Natl Acad Sci U S A; 2017 Jul; 114(29):E5825-E5834. PubMed ID: 28634294
[TBL] [Abstract][Full Text] [Related]
12. Allosterism in the PDZ Family.
Stevens AO; He Y
Int J Mol Sci; 2022 Jan; 23(3):. PubMed ID: 35163402
[TBL] [Abstract][Full Text] [Related]
13. N-Terminus of the Third PDZ Domain of PSD-95 Orchestrates Allosteric Communication for Selective Ligand Binding.
Guclu TF; Kocatug N; Atilgan AR; Atilgan C
J Chem Inf Model; 2021 Jan; 61(1):347-357. PubMed ID: 33331776
[TBL] [Abstract][Full Text] [Related]
14. Mechanisms of Differential Allosteric Modulation in Homologous Proteins: Insights from the Analysis of Internal Dynamics and Energetics of PDZ Domains.
Morra G; Genoni A; Colombo G
J Chem Theory Comput; 2014 Dec; 10(12):5677-89. PubMed ID: 26583250
[TBL] [Abstract][Full Text] [Related]
15. Seeking allosteric networks in PDZ domains.
Gautier C; Laursen L; Jemth P; Gianni S
Protein Eng Des Sel; 2018 Oct; 31(10):367-373. PubMed ID: 30690500
[TBL] [Abstract][Full Text] [Related]
16. Coevolution-based prediction of key allosteric residues for protein function regulation.
Xie J; Zhang W; Zhu X; Deng M; Lai L
Elife; 2023 Feb; 12():. PubMed ID: 36799896
[TBL] [Abstract][Full Text] [Related]
17. Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations.
Hertig S; Latorraca NR; Dror RO
PLoS Comput Biol; 2016 Jun; 12(6):e1004746. PubMed ID: 27285999
[TBL] [Abstract][Full Text] [Related]
18. What Mutagenesis Can and Cannot Reveal About Allostery.
Carlson GM; Fenton AW
Biophys J; 2016 May; 110(9):1912-23. PubMed ID: 27166800
[TBL] [Abstract][Full Text] [Related]
19. Protein dynamics and allostery: an NMR view.
Tzeng SR; Kalodimos CG
Curr Opin Struct Biol; 2011 Feb; 21(1):62-7. PubMed ID: 21109422
[TBL] [Abstract][Full Text] [Related]
20. Allosteric regulation and catalysis emerge via a common route.
Goodey NM; Benkovic SJ
Nat Chem Biol; 2008 Aug; 4(8):474-82. PubMed ID: 18641628
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
