582 related articles for article (PubMed ID: 25437436)
1. Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.
Ma W; Ay F; Lee C; Gulsoy G; Deng X; Cook S; Hesson J; Cavanaugh C; Ware CB; Krumm A; Shendure J; Blau CA; Disteche CM; Noble WS; Duan Z
Nat Methods; 2015 Jan; 12(1):71-8. PubMed ID: 25437436
[TBL] [Abstract][Full Text] [Related]
2. Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution.
Ma W; Ay F; Lee C; Gulsoy G; Deng X; Cook S; Hesson J; Cavanaugh C; Ware CB; Krumm A; Shendure J; Blau CA; Disteche CM; Noble WS; Duan Z
Methods; 2018 Jun; 142():59-73. PubMed ID: 29382556
[TBL] [Abstract][Full Text] [Related]
3. Targeted DNase Hi-C.
Duan Z
Methods Mol Biol; 2021; 2157():65-83. PubMed ID: 32820399
[TBL] [Abstract][Full Text] [Related]
4. Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.
Sabo PJ; Kuehn MS; Thurman R; Johnson BE; Johnson EM; Cao H; Yu M; Rosenzweig E; Goldy J; Haydock A; Weaver M; Shafer A; Lee K; Neri F; Humbert R; Singer MA; Richmond TA; Dorschner MO; McArthur M; Hawrylycz M; Green RD; Navas PA; Noble WS; Stamatoyannopoulos JA
Nat Methods; 2006 Jul; 3(7):511-8. PubMed ID: 16791208
[TBL] [Abstract][Full Text] [Related]
5. Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.
Xi H; Shulha HP; Lin JM; Vales TR; Fu Y; Bodine DM; McKay RD; Chenoweth JG; Tesar PJ; Furey TS; Ren B; Weng Z; Crawford GE
PLoS Genet; 2007 Aug; 3(8):e136. PubMed ID: 17708682
[TBL] [Abstract][Full Text] [Related]
6. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).
Crawford GE; Holt IE; Whittle J; Webb BD; Tai D; Davis S; Margulies EH; Chen Y; Bernat JA; Ginsburg D; Zhou D; Luo S; Vasicek TJ; Daly MJ; Wolfsberg TG; Collins FS
Genome Res; 2006 Jan; 16(1):123-31. PubMed ID: 16344561
[TBL] [Abstract][Full Text] [Related]
7. Advances of DNase-seq for mapping active gene regulatory elements across the genome in animals.
Chen A; Chen D; Chen Y
Gene; 2018 Aug; 667():83-94. PubMed ID: 29772251
[TBL] [Abstract][Full Text] [Related]
8. Discovery of functional noncoding elements by digital analysis of chromatin structure.
Sabo PJ; Hawrylycz M; Wallace JC; Humbert R; Yu M; Shafer A; Kawamoto J; Hall R; Mack J; Dorschner MO; McArthur M; Stamatoyannopoulos JA
Proc Natl Acad Sci U S A; 2004 Nov; 101(48):16837-42. PubMed ID: 15550541
[TBL] [Abstract][Full Text] [Related]
9. Mapping regulatory elements by DNaseI hypersensitivity chip (DNase-Chip).
Shibata Y; Crawford GE
Methods Mol Biol; 2009; 556():177-90. PubMed ID: 19488879
[TBL] [Abstract][Full Text] [Related]
10. High-throughput localization of functional elements by quantitative chromatin profiling.
Dorschner MO; Hawrylycz M; Humbert R; Wallace JC; Shafer A; Kawamoto J; Mack J; Hall R; Goldy J; Sabo PJ; Kohli A; Li Q; McArthur M; Stamatoyannopoulos JA
Nat Methods; 2004 Dec; 1(3):219-25. PubMed ID: 15782197
[TBL] [Abstract][Full Text] [Related]
11. Iteratively improving Hi-C experiments one step at a time.
Golloshi R; Sanders JT; McCord RP
Methods; 2018 Jun; 142():47-58. PubMed ID: 29723572
[TBL] [Abstract][Full Text] [Related]
12. Practical Analysis of Genome Contact Interaction Experiments.
Carty MA; Elemento O
Methods Mol Biol; 2016; 1418():177-89. PubMed ID: 27008015
[TBL] [Abstract][Full Text] [Related]
13. In Situ Hi-C for Plants: An Improved Method to Detect Long-Range Chromatin Interactions.
Padmarasu S; Himmelbach A; Mascher M; Stein N
Methods Mol Biol; 2019; 1933():441-472. PubMed ID: 30945203
[TBL] [Abstract][Full Text] [Related]
14. Genome-scale mapping of DNase I hypersensitivity.
John S; Sabo PJ; Canfield TK; Lee K; Vong S; Weaver M; Wang H; Vierstra J; Reynolds AP; Thurman RE; Stamatoyannopoulos JA
Curr Protoc Mol Biol; 2013 Jul; Chapter 27():Unit 21.27. PubMed ID: 23821440
[TBL] [Abstract][Full Text] [Related]
15. Epigenetics, chromatin and genome organization: recent advances from the ENCODE project.
Siggens L; Ekwall K
J Intern Med; 2014 Sep; 276(3):201-14. PubMed ID: 24605849
[TBL] [Abstract][Full Text] [Related]
16. [Three-dimensional genome organization: a lesson from the Polycomb-Group proteins].
Bantignies F
Biol Aujourdhui; 2013; 207(1):19-31. PubMed ID: 23694722
[TBL] [Abstract][Full Text] [Related]
17. Open chromatin in plant genomes.
Zhang W; Zhang T; Wu Y; Jiang J
Cytogenet Genome Res; 2014; 143(1-3):18-27. PubMed ID: 24923879
[TBL] [Abstract][Full Text] [Related]
18. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Khalil AM; Guttman M; Huarte M; Garber M; Raj A; Rivea Morales D; Thomas K; Presser A; Bernstein BE; van Oudenaarden A; Regev A; Lander ES; Rinn JL
Proc Natl Acad Sci U S A; 2009 Jul; 106(28):11667-72. PubMed ID: 19571010
[TBL] [Abstract][Full Text] [Related]
19. Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin.
Kodama Y; Nagaya S; Shinmyo A; Kato K
Plant Cell Physiol; 2007 Mar; 48(3):459-70. PubMed ID: 17283013
[TBL] [Abstract][Full Text] [Related]
20. A streamlined tethered chromosome conformation capture protocol.
Gabdank I; Ramakrishnan S; Villeneuve AM; Fire AZ
BMC Genomics; 2016 Apr; 17():274. PubMed ID: 27036078
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
