286 related articles for article (PubMed ID: 25472669)
1. Expanding epigenomics to archived FFPE tissues: an evaluation of DNA repair methodologies.
Siegel EM; Berglund AE; Riggs BM; Eschrich SA; Putney RM; Ajidahun AO; Coppola D; Shibata D
Cancer Epidemiol Biomarkers Prev; 2014 Dec; 23(12):2622-31. PubMed ID: 25472669
[TBL] [Abstract][Full Text] [Related]
2. A methodological study of genome-wide DNA methylation analyses using matched archival formalin-fixed paraffin embedded and fresh frozen breast tumors.
Espinal AC; Wang D; Yan L; Liu S; Tang L; Hu Q; Morrison CD; Ambrosone CB; Higgins MJ; Sucheston-Campbell LE
Oncotarget; 2017 Feb; 8(9):14821-14829. PubMed ID: 28118602
[TBL] [Abstract][Full Text] [Related]
3. Formalin-fixed, paraffin-embedded (FFPE) tissue epigenomics using Infinium HumanMethylation450 BeadChip assays.
de Ruijter TC; de Hoon JP; Slaats J; de Vries B; Janssen MJ; van Wezel T; Aarts MJ; van Engeland M; Tjan-Heijnen VC; Van Neste L; Veeck J
Lab Invest; 2015 Jul; 95(7):833-42. PubMed ID: 25867767
[TBL] [Abstract][Full Text] [Related]
4. Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed, paraffin-embedded paired tumor and normal tissue.
Jasmine F; Rahaman R; Roy S; Raza M; Paul R; Rakibuz-Zaman M; Paul-Brutus R; Dodsworth C; Kamal M; Ahsan H; Kibriya MG
BMC Res Notes; 2012 Feb; 5():117. PubMed ID: 22357164
[TBL] [Abstract][Full Text] [Related]
5. Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours.
Kling T; Wenger A; Beck S; Carén H
Clin Epigenetics; 2017; 9():33. PubMed ID: 28392843
[TBL] [Abstract][Full Text] [Related]
6. Validation of DNA methylation profiling in formalin-fixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray.
Moran S; Vizoso M; Martinez-Cardús A; Gomez A; Matías-Guiu X; Chiavenna SM; Fernandez AG; Esteller M
Epigenetics; 2014 Jun; 9(6):829-33. PubMed ID: 24732293
[TBL] [Abstract][Full Text] [Related]
7. Genome-wide DNA methylation analysis of formalin-fixed paraffin embedded colorectal cancer tissue.
Dumenil TD; Wockner LF; Bettington M; McKeone DM; Klein K; Bowdler LM; Montgomery GW; Leggett BA; Whitehall VL
Genes Chromosomes Cancer; 2014 Jul; 53(7):537-48. PubMed ID: 24677610
[TBL] [Abstract][Full Text] [Related]
8. Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue.
Mittempergher L; de Ronde JJ; Nieuwland M; Kerkhoven RM; Simon I; Rutgers EJ; Wessels LF; Van't Veer LJ
PLoS One; 2011 Feb; 6(2):e17163. PubMed ID: 21347257
[TBL] [Abstract][Full Text] [Related]
9. Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics.
Munchel S; Hoang Y; Zhao Y; Cottrell J; Klotzle B; Godwin AK; Koestler D; Beyerlein P; Fan JB; Bibikova M; Chien J
Oncotarget; 2015 Sep; 6(28):25943-61. PubMed ID: 26305677
[TBL] [Abstract][Full Text] [Related]
10. Adaptation of a RAS pathway activation signature from FF to FFPE tissues in colorectal cancer.
Omolo B; Yang M; Lo FY; Schell MJ; Austin S; Howard K; Madan A; Yeatman TJ
BMC Med Genomics; 2016 Oct; 9(1):65. PubMed ID: 27756306
[TBL] [Abstract][Full Text] [Related]
11. Evaluation of clinical formalin-fixed paraffin-embedded tissue quality for targeted-bisulfite sequencing.
Ohmomo H; Komaki S; Ono K; Sutoh Y; Hachiya T; Arai E; Fujimoto H; Yoshida T; Kanai Y; Sasaki M; Shimizu A
Pathol Int; 2021 Feb; 71(2):135-140. PubMed ID: 33333623
[TBL] [Abstract][Full Text] [Related]
12. A Critical Evaluation of the PAXgene Tissue Fixation System: Morphology, Immunohistochemistry, Molecular Biology, and Proteomics.
Mathieson W; Marcon N; Antunes L; Ashford DA; Betsou F; Frasquilho SG; Kofanova OA; McKay SC; Pericleous S; Smith C; Unger KM; Zeller C; Thomas GA
Am J Clin Pathol; 2016 Jul; 146(1):25-40. PubMed ID: 27402607
[TBL] [Abstract][Full Text] [Related]
13. Reliable gene expression profiling of formalin-fixed paraffin-embedded breast cancer tissue (FFPE) using cDNA-mediated annealing, extension, selection, and ligation whole-genome (DASL WG) assay.
Iddawela M; Rueda OM; Klarqvist M; Graf S; Earl HM; Caldas C
BMC Med Genomics; 2016 Aug; 9(1):54. PubMed ID: 27542606
[TBL] [Abstract][Full Text] [Related]
14. Oligonucleotide array outperforms SNP array on formalin-fixed paraffin-embedded clinical samples.
Nasri S; Anjomshoaa A; Song S; Guilford P; McNoe L; Black M; Phillips V; Reeve A; Humar B
Cancer Genet Cytogenet; 2010 Apr; 198(1):1-6. PubMed ID: 20303007
[TBL] [Abstract][Full Text] [Related]
15. Fresh and frozen cardiac tissue are comparable in DNA methylation array β-values, but formalin-fixed, paraffin-embedded tissue may overestimate DNA methylation levels.
Dupont ME; Jacobsen SB; Christiansen SNN; Tfelt-Hansen J; Smerup MH; Andersen JD; Morling N
Sci Rep; 2023 Sep; 13(1):16381. PubMed ID: 37773256
[TBL] [Abstract][Full Text] [Related]
16. Improved reproducibility in genome-wide DNA methylation analysis for PAXgene-fixed samples compared with restored formalin-fixed and paraffin-embedded DNA.
Andersen GB; Hager H; Hansen LL; Tost J
Anal Biochem; 2015 Jan; 468():50-8. PubMed ID: 25277813
[TBL] [Abstract][Full Text] [Related]
17. DNA Methylation in Ovarian Tumors-a Comparison Between Fresh Tissue and FFPE Samples.
Oliveira DVNP; Hentze J; O'Rourke CJ; Andersen JB; Høgdall C; Høgdall EV
Reprod Sci; 2021 Nov; 28(11):3212-3218. PubMed ID: 33891290
[TBL] [Abstract][Full Text] [Related]
18. Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples.
Bonnet E; Moutet ML; Baulard C; Bacq-Daian D; Sandron F; Mesrob L; Fin B; Delépine M; Palomares MA; Jubin C; Blanché H; Meyer V; Boland A; Olaso R; Deleuze JF
PLoS One; 2018; 13(4):e0195471. PubMed ID: 29621323
[TBL] [Abstract][Full Text] [Related]
19. Whole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq.
Li P; Conley A; Zhang H; Kim HL
BMC Genomics; 2014 Dec; 15(1):1087. PubMed ID: 25495041
[TBL] [Abstract][Full Text] [Related]
20. DNA quality evaluation of formalin-fixed paraffin-embedded heart tissue for DNA methylation array analysis.
Dupont ME; Christiansen SN; Jacobsen SB; Kampmann ML; Olsen KB; Tfelt-Hansen J; Banner J; Morling N; Andersen JD
Sci Rep; 2023 Feb; 13(1):2004. PubMed ID: 36737451
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
