BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

530 related articles for article (PubMed ID: 25473421)

  • 1. Chromatin accessibility: a window into the genome.
    Tsompana M; Buck MJ
    Epigenetics Chromatin; 2014; 7(1):33. PubMed ID: 25473421
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genomic methods in profiling DNA accessibility and factor localization.
    Klein DC; Hainer SJ
    Chromosome Res; 2020 Mar; 28(1):69-85. PubMed ID: 31776829
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
    Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
    J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo.
    Chen PB; Zhu LJ; Hainer SJ; McCannell KN; Fazzio TG
    BMC Genomics; 2014 Dec; 15(1):1104. PubMed ID: 25494698
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Global Mapping of Open Chromatin Regulatory Elements by Formaldehyde-Assisted Isolation of Regulatory Elements Followed by Sequencing (FAIRE-seq).
    Bianco S; Rodrigue S; Murphy BD; Gévry N
    Methods Mol Biol; 2015; 1334():261-72. PubMed ID: 26404156
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Dissecting the Epigenome Driving Drug Resistance by ATAC-Seq.
    de Nicola F; Corleone G; Goeman F
    Methods Mol Biol; 2022; 2535():171-185. PubMed ID: 35867231
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Emerging Approaches to Profile Accessible Chromatin from Formalin-Fixed Paraffin-Embedded Sections.
    Sunitha Kumary VUN; Venters BJ; Raman K; Sen S; Estève PO; Cowles MW; Keogh MC; Pradhan S
    Epigenomes; 2024 May; 8(2):. PubMed ID: 38804369
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).
    Giresi PG; Lieb JD
    Methods; 2009 Jul; 48(3):233-9. PubMed ID: 19303047
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The identification of cis-regulatory elements: A review from a machine learning perspective.
    Li Y; Chen CY; Kaye AM; Wasserman WW
    Biosystems; 2015 Dec; 138():6-17. PubMed ID: 26499213
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Open chromatin in plant genomes.
    Zhang W; Zhang T; Wu Y; Jiang J
    Cytogenet Genome Res; 2014; 143(1-3):18-27. PubMed ID: 24923879
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.
    Vera DL; Madzima TF; Labonne JD; Alam MP; Hoffman GG; Girimurugan SB; Zhang J; McGinnis KM; Dennis JH; Bass HW
    Plant Cell; 2014 Oct; 26(10):3883-93. PubMed ID: 25361955
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Profiling Open Chromatin Structure in the Ovarian Somatic Cells Using ATAC-seq.
    Murano K; Iwasaki YW; Siomi H
    Methods Mol Biol; 2018; 1680():165-177. PubMed ID: 29030848
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Assay for Transposase-Accessible Chromatin-Sequencing Using
    Bright AR; Veenstra GJC
    Cold Spring Harb Protoc; 2019 Jan; 2019(1):. PubMed ID: 30042136
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63.
    Bao X; Rubin AJ; Qu K; Zhang J; Giresi PG; Chang HY; Khavari PA
    Genome Biol; 2015 Dec; 16():284. PubMed ID: 26683334
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Analyzing the global chromatin structure of keratinocytes by MNase-seq.
    Rizzo JM; Sinha S
    Methods Mol Biol; 2014; 1195():49-59. PubMed ID: 24676786
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome-wide mapping of nucleosome positions in Schizosaccharomyces pombe.
    Lantermann A; Strålfors A; Fagerström-Billai F; Korber P; Ekwall K
    Methods; 2009 Jul; 48(3):218-25. PubMed ID: 19233281
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ubiquitous human 'master' origins of replication are encoded in the DNA sequence via a local enrichment in nucleosome excluding energy barriers.
    Drillon G; Audit B; Argoul F; Arneodo A
    J Phys Condens Matter; 2015 Feb; 27(6):064102. PubMed ID: 25563930
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mapping nucleosome positions using DNase-seq.
    Zhong J; Luo K; Winter PS; Crawford GE; Iversen ES; Hartemink AJ
    Genome Res; 2016 Mar; 26(3):351-64. PubMed ID: 26772197
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation.
    Nalabothula N; Al-jumaily T; Eteleeb AM; Flight RM; Xiaorong S; Moseley H; Rouchka EC; Fondufe-Mittendorf YN
    PLoS One; 2015; 10(8):e0135410. PubMed ID: 26305327
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Hierarchical regulation of the genome: global changes in nucleosome organization potentiate genome response.
    Sexton BS; Druliner BR; Vera DL; Avey D; Zhu F; Dennis JH
    Oncotarget; 2016 Feb; 7(6):6460-75. PubMed ID: 26771136
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 27.