BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

85 related articles for article (PubMed ID: 25485614)

  • 1. A Bayesian mixture model for chromatin interaction data.
    Niu L; Lin S
    Stat Appl Genet Mol Biol; 2015 Feb; 14(1):53-64. PubMed ID: 25485614
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MICC: an R package for identifying chromatin interactions from ChIA-PET data.
    He C; Zhang MQ; Wang X
    Bioinformatics; 2015 Dec; 31(23):3832-4. PubMed ID: 26231426
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Statistical models for detecting differential chromatin interactions mediated by a protein.
    Niu L; Li G; Lin S
    PLoS One; 2014; 9(5):e97560. PubMed ID: 24835279
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation.
    Goh Y; Fullwood MJ; Poh HM; Peh SQ; Ong CT; Zhang J; Ruan X; Ruan Y
    J Vis Exp; 2012 Apr; (62):. PubMed ID: 22564980
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.
    Li G; Fullwood MJ; Xu H; Mulawadi FH; Velkov S; Vega V; Ariyaratne PN; Mohamed YB; Ooi HS; Tennakoon C; Wei CL; Ruan Y; Sung WK
    Genome Biol; 2010; 11(2):R22. PubMed ID: 20181287
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ChIAMM: A Mixture Model for Statistical Analysis of Long-Range Chromatin Interactions From ChIA-PET Experiments.
    Arega Y; Jiang H; Wang S; Zhang J; Niu X; Li G
    Front Genet; 2020; 11():616160. PubMed ID: 33381154
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ChIAPoP: a new tool for ChIA-PET data analysis.
    Huang W; Medvedovic M; Zhang J; Niu L
    Nucleic Acids Res; 2019 Apr; 47(7):e37. PubMed ID: 30753588
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
    Buisine N; Ruan X; Ruan Y; Sachs LM
    Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895563
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
    Buisine N; Ruan X; Ruan Y; Sachs LM
    Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895565
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions.
    Li X; Luo OJ; Wang P; Zheng M; Wang D; Piecuch E; Zhu JJ; Tian SZ; Tang Z; Li G; Ruan Y
    Nat Protoc; 2017 May; 12(5):899-915. PubMed ID: 28358394
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Deciphering Noncoding RNA and Chromatin Interactions: Multiplex Chromatin Interaction Analysis by Paired-End Tag Sequencing (mChIA-PET).
    Choy J; Fullwood MJ
    Methods Mol Biol; 2017; 1468():63-89. PubMed ID: 27662871
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Empirical Bayes screening of many p-values with applications to microarray studies.
    Datta S; Datta S
    Bioinformatics; 2005 May; 21(9):1987-94. PubMed ID: 15691856
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application.
    Li G; Cai L; Chang H; Hong P; Zhou Q; Kulakova EV; Kolchanov NA; Ruan Y
    BMC Genomics; 2014; 15 Suppl 12(Suppl 12):S11. PubMed ID: 25563301
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A fully Bayesian hidden Ising model for ChIP-seq data analysis.
    Mo Q
    Biostatistics; 2012 Jan; 13(1):113-28. PubMed ID: 21914728
    [TBL] [Abstract][Full Text] [Related]  

  • 15. FastHiC: a fast and accurate algorithm to detect long-range chromosomal interactions from Hi-C data.
    Xu Z; Zhang G; Wu C; Li Y; Hu M
    Bioinformatics; 2016 Sep; 32(17):2692-5. PubMed ID: 27153668
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bayesian modeling of ChIP-chip data through a high-order Ising model.
    Mo Q; Liang F
    Biometrics; 2010 Dec; 66(4):1284-94. PubMed ID: 20128774
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3).
    Li G; Sun T; Chang H; Cai L; Hong P; Zhou Q
    Genes (Basel); 2019 Jul; 10(7):. PubMed ID: 31336684
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computational analysis and modeling of genome-scale avidity distribution of transcription factor binding sites in chip-pet experiments.
    Kuznetsov VA; Orlov YL; Wei CL; Ruan Y
    Genome Inform; 2007; 19():83-94. PubMed ID: 18546507
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ChIA-PET analysis of transcriptional chromatin interactions.
    Zhang J; Poh HM; Peh SQ; Sia YY; Li G; Mulawadi FH; Goh Y; Fullwood MJ; Sung WK; Ruan X; Ruan Y
    Methods; 2012 Nov; 58(3):289-99. PubMed ID: 22926262
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ChIPmix: mixture model of regressions for two-color ChIP-chip analysis.
    Martin-Magniette ML; Mary-Huard T; BĂ©rard C; Robin S
    Bioinformatics; 2008 Aug; 24(16):i181-6. PubMed ID: 18689822
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.