BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

145 related articles for article (PubMed ID: 25486504)

  • 1. Timing is everything: unifying codon translation rates and nascent proteome behavior.
    Nissley DA; O'Brien EP
    J Am Chem Soc; 2014 Dec; 136(52):17892-8. PubMed ID: 25486504
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Understanding the influence of codon translation rates on cotranslational protein folding.
    O'Brien EP; Ciryam P; Vendruscolo M; Dobson CM
    Acc Chem Res; 2014 May; 47(5):1536-44. PubMed ID: 24784899
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Physical Origins of Codon Positions That Strongly Influence Cotranslational Folding: A Framework for Controlling Nascent-Protein Folding.
    Sharma AK; Bukau B; O'Brien EP
    J Am Chem Soc; 2016 Feb; 138(4):1180-95. PubMed ID: 26716464
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Optimizing scaleup yield for protein production: Computationally Optimized DNA Assembly (CODA) and Translation Engineering.
    Hatfield GW; Roth DA
    Biotechnol Annu Rev; 2007; 13():27-42. PubMed ID: 17875472
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Modeling the effect of codon translation rates on co-translational protein folding mechanisms of arbitrary complexity.
    Caniparoli L; O'Brien EP
    J Chem Phys; 2015 Apr; 142(14):145102. PubMed ID: 25877595
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Translation Rates and Protein Folding.
    Komar AA; Samatova E; Rodnina MV
    J Mol Biol; 2024 Jul; 436(14):168384. PubMed ID: 38065274
    [TBL] [Abstract][Full Text] [Related]  

  • 7. In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome.
    Ciryam P; Morimoto RI; Vendruscolo M; Dobson CM; O'Brien EP
    Proc Natl Acad Sci U S A; 2013 Jan; 110(2):E132-40. PubMed ID: 23256155
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Codon optimality, bias and usage in translation and mRNA decay.
    Hanson G; Coller J
    Nat Rev Mol Cell Biol; 2018 Jan; 19(1):20-30. PubMed ID: 29018283
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computational evidence that fast translation speed can increase the probability of cotranslational protein folding.
    Wang E; Wang J; Chen C; Xiao Y
    Sci Rep; 2015 Oct; 5():15316. PubMed ID: 26486723
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Kinetic modelling indicates that fast-translating codons can coordinate cotranslational protein folding by avoiding misfolded intermediates.
    O'Brien EP; Vendruscolo M; Dobson CM
    Nat Commun; 2014; 5():2988. PubMed ID: 24394622
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Folding at the rhythm of the rare codon beat.
    Marin M
    Biotechnol J; 2008 Aug; 3(8):1047-57. PubMed ID: 18624343
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Synonymous codon substitutions perturb cotranslational protein folding in vivo and impair cell fitness.
    Walsh IM; Bowman MA; Soto Santarriaga IF; Rodriguez A; Clark PL
    Proc Natl Acad Sci U S A; 2020 Feb; 117(7):3528-3534. PubMed ID: 32015130
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX.
    Alexaki A; Kames J; Hettiarachchi GK; Athey JC; Katneni UK; Hunt RC; Hamasaki-Katagiri N; Holcomb DD; DiCuccio M; Bar H; Komar AA; Kimchi-Sarfaty C
    F1000Res; 2020; 9():174. PubMed ID: 33014344
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The Codon Usage Code for Cotranslational Folding of Viral Capsids.
    Pintó RM; Bosch A
    Genome Biol Evol; 2021 Sep; 13(9):. PubMed ID: 33914886
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Prediction of variable translation rate effects on cotranslational protein folding.
    O'Brien EP; Vendruscolo M; Dobson CM
    Nat Commun; 2012 May; 3():868. PubMed ID: 22643895
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Insights into Cotranslational Nascent Protein Behavior from Computer Simulations.
    Trovato F; O'Brien EP
    Annu Rev Biophys; 2016 Jul; 45():345-69. PubMed ID: 27297399
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.
    Stein KC; Frydman J
    J Biol Chem; 2019 Feb; 294(6):2076-2084. PubMed ID: 30504455
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ribosome-mediated translational pause and protein domain organization.
    Thanaraj TA; Argos P
    Protein Sci; 1996 Aug; 5(8):1594-612. PubMed ID: 8844849
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genetic code ambiguity: an unexpected source of proteome innovation and phenotypic diversity.
    Moura GR; Carreto LC; Santos MA
    Curr Opin Microbiol; 2009 Dec; 12(6):631-7. PubMed ID: 19853500
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A model of protein translation including codon bias, nonsense errors, and ribosome recycling.
    Gilchrist MA; Wagner A
    J Theor Biol; 2006 Apr; 239(4):417-34. PubMed ID: 16171830
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.