These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

122 related articles for article (PubMed ID: 25487745)

  • 21. Multiple Simulated Annealing-Molecular Dynamics (MSA-MD) for Conformational Space Search of Peptide and Miniprotein.
    Hao GF; Xu WF; Yang SG; Yang GF
    Sci Rep; 2015 Oct; 5():15568. PubMed ID: 26492886
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Frontiers in molecular dynamics simulations of DNA.
    Pérez A; Luque FJ; Orozco M
    Acc Chem Res; 2012 Feb; 45(2):196-205. PubMed ID: 21830782
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S; Zacharias M
    J Struct Biol; 2009 Jun; 166(3):288-94. PubMed ID: 19272454
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Cherry-picking functionally relevant substates from long md trajectories using a stratified sampling approach.
    Chandramouli B; Mancini G
    Theor Biol Forum; 2016 Jan; 109(1-2):49-69. PubMed ID: 29513352
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Conformational behavior of flavin adenine dinucleotide: conserved stereochemistry in bound and free states.
    Kuppuraj G; Kruise D; Yura K
    J Phys Chem B; 2014 Nov; 118(47):13486-97. PubMed ID: 25389798
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Conformations of some large-ring cyclodextrins derived from conformational search with molecular dynamics simulations and principal component analysis.
    Ivanov PM
    J Phys Chem B; 2010 Mar; 114(8):2650-9. PubMed ID: 20141116
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Efficient Conformational Sampling of Collective Motions of Proteins with Principal Component Analysis-Based Parallel Cascade Selection Molecular Dynamics.
    Yasuda T; Shigeta Y; Harada R
    J Chem Inf Model; 2020 Aug; 60(8):4021-4029. PubMed ID: 32786508
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Collective Langevin dynamics of conformational motions in proteins.
    Lange OF; Grubmüller H
    J Chem Phys; 2006 Jun; 124(21):214903. PubMed ID: 16774438
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Conformational sampling by NMR solution structures calculated with the program DIANA evaluated by comparison with long-time molecular dynamics calculations in explicit water.
    Berndt KD; Güntert P; Wüthrich K
    Proteins; 1996 Mar; 24(3):304-13. PubMed ID: 8778777
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Exploring the role of the phospholipid ligand in endothelial protein C receptor: a molecular dynamics study.
    Chiappori F; Merelli I; Milanesi L; Rovida E
    Proteins; 2010 Sep; 78(12):2679-90. PubMed ID: 20589634
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Quantum clustering and network analysis of MD simulation trajectories to probe the conformational ensembles of protein-ligand interactions.
    Bhattacharyya M; Vishveshwara S
    Mol Biosyst; 2011 Jul; 7(7):2320-30. PubMed ID: 21617814
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Metadynamics Enhanced Markov Modeling of Protein Dynamics.
    Biswas M; Lickert B; Stock G
    J Phys Chem B; 2018 May; 122(21):5508-5514. PubMed ID: 29338243
    [TBL] [Abstract][Full Text] [Related]  

  • 33. HIV-1 TAR RNA spontaneously undergoes relevant apo-to-holo conformational transitions in molecular dynamics and constrained geometrical simulations.
    Fulle S; Christ NA; Kestner E; Gohlke H
    J Chem Inf Model; 2010 Aug; 50(8):1489-501. PubMed ID: 20726603
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Motion of a disordered polypeptide chain as studied by paramagnetic relaxation enhancements, 15N relaxation, and molecular dynamics simulations: how fast is segmental diffusion in denatured ubiquitin?
    Xue Y; Skrynnikov NR
    J Am Chem Soc; 2011 Sep; 133(37):14614-28. PubMed ID: 21819149
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Structural insight into the MC4R conformational changes via different agonist-mediated receptor signaling.
    Yang Y; Chen M; Dimmitt R; Harmon CM
    Biochemistry; 2014 Nov; 53(45):7086-92. PubMed ID: 25347793
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Molecular dynamics simulations and elastic network analysis of protein kinase B (Akt/PKB) inactivation.
    Cheng S; Niv MY
    J Chem Inf Model; 2010 Sep; 50(9):1602-10. PubMed ID: 20735046
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Protein hinge bending as seen in molecular dynamics simulations of native and M61 mutant T4 lysozymes.
    Arnold GE; Ornstein RL
    Biopolymers; 1997 Apr; 41(5):533-44. PubMed ID: 9095676
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results.
    Langley DR
    J Biomol Struct Dyn; 1998 Dec; 16(3):487-509. PubMed ID: 10052609
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Dynamic and Thermodynamic Signatures of Native and Non-Native Protein States with Application to the Improvement of Protein Structures.
    Li DW; Brüschweiler R
    J Chem Theory Comput; 2012 Jul; 8(7):2531-9. PubMed ID: 26588978
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Conformational dynamics of human IAPP monomers.
    Murphy RD; Conlon J; Mansoor T; Luca S; Vaiana SM; Buchete NV
    Biophys Chem; 2012 Jun; 167():1-7. PubMed ID: 22609945
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.