358 related articles for article (PubMed ID: 25488330)
1. Structural templates for comparative protein docking.
Anishchenko I; Kundrotas PJ; Tuzikov AV; Vakser IA
Proteins; 2015 Sep; 83(9):1563-70. PubMed ID: 25488330
[TBL] [Abstract][Full Text] [Related]
2. Docking by structural similarity at protein-protein interfaces.
Sinha R; Kundrotas PJ; Vakser IA
Proteins; 2010 Nov; 78(15):3235-41. PubMed ID: 20715056
[TBL] [Abstract][Full Text] [Related]
3. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
Gao Y; Douguet D; Tovchigrechko A; Vakser IA
Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
[TBL] [Abstract][Full Text] [Related]
4. Dockground: A comprehensive data resource for modeling of protein complexes.
Kundrotas PJ; Anishchenko I; Dauzhenka T; Kotthoff I; Mnevets D; Copeland MM; Vakser IA
Protein Sci; 2018 Jan; 27(1):172-181. PubMed ID: 28891124
[TBL] [Abstract][Full Text] [Related]
5. Simulated unbound structures for benchmarking of protein docking in the DOCKGROUND resource.
Kirys T; Ruvinsky AM; Singla D; Tuzikov AV; Kundrotas PJ; Vakser IA
BMC Bioinformatics; 2015 Jul; 16(1):243. PubMed ID: 26227548
[TBL] [Abstract][Full Text] [Related]
6. DOCKGROUND resource for studying protein-protein interfaces.
Douguet D; Chen HC; Tovchigrechko A; Vakser IA
Bioinformatics; 2006 Nov; 22(21):2612-8. PubMed ID: 16928732
[TBL] [Abstract][Full Text] [Related]
7. Dockground resource for protein recognition studies.
Collins KW; Copeland MM; Kotthoff I; Singh A; Kundrotas PJ; Vakser IA
Protein Sci; 2022 Dec; 31(12):e4481. PubMed ID: 36281025
[TBL] [Abstract][Full Text] [Related]
8. Protein docking using case-based reasoning.
Ghoorah AW; Devignes MD; Smaïl-Tabbone M; Ritchie DW
Proteins; 2013 Dec; 81(12):2150-8. PubMed ID: 24123156
[TBL] [Abstract][Full Text] [Related]
9. DOCKGROUND protein-protein docking decoy set.
Liu S; Gao Y; Vakser IA
Bioinformatics; 2008 Nov; 24(22):2634-5. PubMed ID: 18812365
[TBL] [Abstract][Full Text] [Related]
10. Protein models docking benchmark 2.
Anishchenko I; Kundrotas PJ; Tuzikov AV; Vakser IA
Proteins; 2015 May; 83(5):891-7. PubMed ID: 25712716
[TBL] [Abstract][Full Text] [Related]
11. Structural quality of unrefined models in protein docking.
Anishchenko I; Kundrotas PJ; Vakser IA
Proteins; 2017 Jan; 85(1):39-45. PubMed ID: 27756103
[TBL] [Abstract][Full Text] [Related]
12. Protein models: the Grand Challenge of protein docking.
Anishchenko I; Kundrotas PJ; Tuzikov AV; Vakser IA
Proteins; 2014 Feb; 82(2):278-87. PubMed ID: 23934791
[TBL] [Abstract][Full Text] [Related]
13. Global and local structural similarity in protein-protein complexes: implications for template-based docking.
Kundrotas PJ; Vakser IA
Proteins; 2013 Dec; 81(12):2137-42. PubMed ID: 23946125
[TBL] [Abstract][Full Text] [Related]
14. Protein-Protein Docking Benchmark 2.0: an update.
Mintseris J; Wiehe K; Pierce B; Anderson R; Chen R; Janin J; Weng Z
Proteins; 2005 Aug; 60(2):214-6. PubMed ID: 15981264
[TBL] [Abstract][Full Text] [Related]
15. Advances in template-based protein docking by utilizing interfaces towards completing structural interactome.
Muratcioglu S; Guven-Maiorov E; Keskin Ö; Gursoy A
Curr Opin Struct Biol; 2015 Dec; 35():87-92. PubMed ID: 26539658
[TBL] [Abstract][Full Text] [Related]
16. How to choose templates for modeling of protein complexes: Insights from benchmarking template-based docking.
Chakravarty D; McElfresh GW; Kundrotas PJ; Vakser IA
Proteins; 2020 Aug; 88(8):1070-1081. PubMed ID: 31994759
[TBL] [Abstract][Full Text] [Related]
17. Dockground Tool for Development and Benchmarking of Protein Docking Procedures.
Kundrotas PJ; Kotthoff I; Choi SW; Copeland MM; Vakser IA
Methods Mol Biol; 2020; 2165():289-300. PubMed ID: 32621232
[TBL] [Abstract][Full Text] [Related]
18. GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions.
Kundrotas PJ; Zhu Z; Vakser IA
Hum Genomics; 2012 Jul; 6(1):7. PubMed ID: 23245398
[TBL] [Abstract][Full Text] [Related]
19. Docking without docking: ISEARCH--prediction of interactions using known interfaces.
Günther S; May P; Hoppe A; Frömmel C; Preissner R
Proteins; 2007 Dec; 69(4):839-44. PubMed ID: 17803236
[TBL] [Abstract][Full Text] [Related]
20. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
Yan Y; Wen Z; Wang X; Huang SY
Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]