These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

70 related articles for article (PubMed ID: 25495450)

  • 1. MPAgenomics: an R package for multi-patient analysis of genomic markers.
    Grimonprez Q; Celisse A; Blanck S; Cheok M; Figeac M; Marot G
    BMC Bioinformatics; 2014 Dec; 15(1):394. PubMed ID: 25495450
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Copynumber: Efficient algorithms for single- and multi-track copy number segmentation.
    Nilsen G; Liestøl K; Van Loo P; Moen Vollan HK; Eide MB; Rueda OM; Chin SF; Russell R; Baumbusch LO; Caldas C; Børresen-Dale AL; Lingjaerde OC
    BMC Genomics; 2012 Nov; 13():591. PubMed ID: 23442169
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genomic and genetic variability of six chicken populations using single nucleotide polymorphism and copy number variants as markers.
    Strillacci MG; Cozzi MC; Gorla E; Mosca F; Schiavini F; Román-Ponce SI; Ruiz López FJ; Schiavone A; Marzoni M; Cerolini S; Bagnato A
    Animal; 2017 May; 11(5):737-745. PubMed ID: 27819220
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An empirical Bayes method for genotyping and SNP detection using multi-sample next-generation sequencing data.
    Huang G; Wang S; Wang X; You N
    Bioinformatics; 2016 Nov; 32(21):3240-3245. PubMed ID: 27378300
    [TBL] [Abstract][Full Text] [Related]  

  • 5. COKGEN: a software for the identification of rare copy number variation from SNP microarrays.
    Yavaş G; Koyutürk M; Ozsoyoğlu M; Gould MP; Laframboise T
    Pac Symp Biocomput; 2010; ():371-82. PubMed ID: 19908389
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SNP-PHAGE--High throughput SNP discovery pipeline.
    Matukumalli LK; Grefenstette JJ; Hyten DL; Choi IY; Cregan PB; Van Tassell CP
    BMC Bioinformatics; 2006 Oct; 7():468. PubMed ID: 17059604
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DNA copy number profiling using single-cell sequencing.
    Wang X; Chen H; Zhang NR
    Brief Bioinform; 2018 Sep; 19(5):731-736. PubMed ID: 28159966
    [TBL] [Abstract][Full Text] [Related]  

  • 8. seqCNA: an R package for DNA copy number analysis in cancer using high-throughput sequencing.
    Mosen-Ansorena D; Telleria N; Veganzones S; De la Orden V; Maestro ML; Aransay AM
    BMC Genomics; 2014 Mar; 15(1):178. PubMed ID: 24597965
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An integrated analysis tool for analyzing hybridization intensities and genotypes using new-generation population-optimized human arrays.
    Huang MC; Chuang TP; Chen CH; Wu JY; Chen YT; Li LH; Yang HC
    BMC Genomics; 2016 Mar; 17():266. PubMed ID: 27029637
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Stacks: an analysis tool set for population genomics.
    Catchen J; Hohenlohe PA; Bassham S; Amores A; Cresko WA
    Mol Ecol; 2013 Jun; 22(11):3124-40. PubMed ID: 23701397
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data.
    Chen Y; Zhao L; Wang Y; Cao M; Gelowani V; Xu M; Agrawal SA; Li Y; Daiger SP; Gibbs R; Wang F; Chen R
    BMC Bioinformatics; 2017 Mar; 18(1):147. PubMed ID: 28253855
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Rseg--an R package to optimize segmentation of SNP array data.
    Lamy P; Wiuf C; Ørntoft TF; Andersen CL
    Bioinformatics; 2011 Feb; 27(3):419-20. PubMed ID: 21134892
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ioncopy: an R Shiny app to call copy number alterations in targeted NGS data.
    Budczies J; Pfarr N; Romanovsky E; Endris V; Stenzinger A; Denkert C
    BMC Bioinformatics; 2018 Apr; 19(1):157. PubMed ID: 29699497
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Application of Nexus copy number software for CNV detection and analysis.
    Darvishi K
    Curr Protoc Hum Genet; 2010 Apr; Chapter 4():Unit 4.14.1-28. PubMed ID: 20373515
    [TBL] [Abstract][Full Text] [Related]  

  • 15. dartr: An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing.
    Gruber B; Unmack PJ; Berry OF; Georges A
    Mol Ecol Resour; 2018 May; 18(3):691-699. PubMed ID: 29266847
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.
    Jiang Y; Qiu Y; Minn AJ; Zhang NR
    Proc Natl Acad Sci U S A; 2016 Sep; 113(37):E5528-37. PubMed ID: 27573852
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SimRAD: an R package for simulation-based prediction of the number of loci expected in RADseq and similar genotyping by sequencing approaches.
    Lepais O; Weir JT
    Mol Ecol Resour; 2014 Nov; 14(6):1314-21. PubMed ID: 24806844
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A remark on copy number variation detection methods.
    Li S; Dou X; Gao R; Ge X; Qian M; Wan L
    PLoS One; 2018; 13(4):e0196226. PubMed ID: 29702671
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SEQMINER: An R-Package to Facilitate the Functional Interpretation of Sequence-Based Associations.
    Zhan X; Liu DJ
    Genet Epidemiol; 2015 Dec; 39(8):619-23. PubMed ID: 26394715
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Determining multiallelic complex copy number and sequence variation from high coverage exome sequencing data.
    Forni D; Martin D; Abujaber R; Sharp AJ; Sironi M; Hollox EJ
    BMC Genomics; 2015 Nov; 16():891. PubMed ID: 26526070
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.