BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 25495735)

  • 21. CpG methylation remodels chromatin structure in vitro.
    Davey C; Pennings S; Allan J
    J Mol Biol; 1997 Mar; 267(2):276-88. PubMed ID: 9096225
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Aberrant de novo methylation of the p16INK4A CpG island is initiated post gene silencing in association with chromatin remodelling and mimics nucleosome positioning.
    Hinshelwood RA; Melki JR; Huschtscha LI; Paul C; Song JZ; Stirzaker C; Reddel RR; Clark SJ
    Hum Mol Genet; 2009 Aug; 18(16):3098-109. PubMed ID: 19477956
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Enhanced nucleosome assembly at CpG sites containing an extended 5-methylcytosine analogue.
    Tomkuvienė M; Meier M; Ikasalaitė D; Wildenauer J; Kairys V; Klimašauskas S; Manelytė L
    Nucleic Acids Res; 2022 Jun; 50(11):6549-6561. PubMed ID: 35648439
    [TBL] [Abstract][Full Text] [Related]  

  • 24. DNA methylation cues in nucleosome geometry, stability and unwrapping.
    Li S; Peng Y; Landsman D; Panchenko AR
    Nucleic Acids Res; 2022 Feb; 50(4):1864-1874. PubMed ID: 35166834
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations.
    Portella G; Battistini F; Orozco M
    PLoS Comput Biol; 2013; 9(11):e1003354. PubMed ID: 24278005
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Structural dynamics of nucleosome core particle: comparison with nucleosomes containing histone variants.
    Ramaswamy A; Bahar I; Ioshikhes I
    Proteins; 2005 Feb; 58(3):683-96. PubMed ID: 15624215
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Nucleosome Positioning of Intronless Genes in the Human Genome.
    Cheng X; Hou Y; Nie Y; Zhang Y; Huang H; Liu H; Sun X
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(4):1111-1121. PubMed ID: 26415210
    [TBL] [Abstract][Full Text] [Related]  

  • 28. spFRET reveals changes in nucleosome breathing by neighboring nucleosomes.
    Buning R; Kropff W; Martens K; van Noort J
    J Phys Condens Matter; 2015 Feb; 27(6):064103. PubMed ID: 25564102
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Nanoscale Probing of Informational Polymers with Nanopores. Applications to Amyloidogenic Fragments, Peptides, and DNA-PNA Hybrids.
    Luchian T; Park Y; Asandei A; Schiopu I; Mereuta L; Apetrei A
    Acc Chem Res; 2019 Jan; 52(1):267-276. PubMed ID: 30605305
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Nanopore-based assay for detection of methylation in double-stranded DNA fragments.
    Shim J; Kim Y; Humphreys GI; Nardulli AM; Kosari F; Vasmatzis G; Taylor WR; Ahlquist DA; Myong S; Bashir R
    ACS Nano; 2015 Jan; 9(1):290-300. PubMed ID: 25569824
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Impact of methylation on the physical properties of DNA.
    Pérez A; Castellazzi CL; Battistini F; Collinet K; Flores O; Deniz O; Ruiz ML; Torrents D; Eritja R; Soler-López M; Orozco M
    Biophys J; 2012 May; 102(9):2140-8. PubMed ID: 22824278
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Nucleosome dynamics and maintenance of epigenetic states of CpG islands.
    Sneppen K; Dodd IB
    Phys Rev E; 2016 Jun; 93(6):062417. PubMed ID: 27415308
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Sequence-dependent nucleosome positioning.
    Chung HR; Vingron M
    J Mol Biol; 2009 Mar; 386(5):1411-22. PubMed ID: 19070622
    [TBL] [Abstract][Full Text] [Related]  

  • 34. The effect of DNA supercoiling on nucleosome structure and stability.
    Elbel T; Langowski J
    J Phys Condens Matter; 2015 Feb; 27(6):064105. PubMed ID: 25563201
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning.
    Gutiérrez G; Millán-Zambrano G; Medina DA; Jordán-Pla A; Pérez-Ortín JE; Peñate X; Chávez S
    Epigenetics Chromatin; 2017 Dec; 10(1):58. PubMed ID: 29212533
    [TBL] [Abstract][Full Text] [Related]  

  • 36. DNA sequence-dependent contributions of core histone tails to nucleosome stability: differential effects of acetylation and proteolytic tail removal.
    Widlund HR; Vitolo JM; Thiriet C; Hayes JJ
    Biochemistry; 2000 Apr; 39(13):3835-41. PubMed ID: 10736184
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Force spectroscopy of chromatin fibers: extracting energetics and structural information from Monte Carlo simulations.
    Kepper N; Ettig R; Stehr R; Marnach S; Wedemann G; Rippe K
    Biopolymers; 2011 Jul; 95(7):435-47. PubMed ID: 21294108
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Prediction of nucleosome positioning in genomes: limits and perspectives of physical and bioinformatic approaches.
    De Santis P; Morosetti S; Scipioni A
    J Biomol Struct Dyn; 2010 Jun; 27(6):747-64. PubMed ID: 20232931
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy.
    Suzuki Y; Higuchi Y; Hizume K; Yokokawa M; Yoshimura SH; Yoshikawa K; Takeyasu K
    Ultramicroscopy; 2010 May; 110(6):682-8. PubMed ID: 20236766
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Probing the Effect of Ubiquitinated Histone on Mononucleosomes by Translocation Dynamics Study through Solid-State Nanopores.
    Hu R; Liu C; Lu W; Wei G; Yu D; Li W; Chen P; Li G; Zhao Q
    Nano Lett; 2022 Feb; 22(3):888-895. PubMed ID: 35060726
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.