BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

948 related articles for article (PubMed ID: 25501392)

  • 21. Detection of Driver Modules with Rarely Mutated Genes in Cancers.
    Li F; Gao L; Wang B
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(2):390-401. PubMed ID: 29994261
    [TBL] [Abstract][Full Text] [Related]  

  • 22. De novo discovery of mutated driver pathways in cancer.
    Vandin F; Upfal E; Raphael BJ
    Genome Res; 2012 Feb; 22(2):375-85. PubMed ID: 21653252
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets.
    Lu S; Lu KN; Cheng SY; Hu B; Ma X; Nystrom N; Lu X
    PLoS Comput Biol; 2015 Aug; 11(8):e1004257. PubMed ID: 26317392
    [TBL] [Abstract][Full Text] [Related]  

  • 24. A scalable approach for discovering conserved active subnetworks across species.
    Deshpande R; Sharma S; Verfaillie CM; Hu WS; Myers CL
    PLoS Comput Biol; 2010 Dec; 6(12):e1001028. PubMed ID: 21170309
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Individualized genetic network analysis reveals new therapeutic vulnerabilities in 6,700 cancer genomes.
    Liu C; Zhao J; Lu W; Dai Y; Hockings J; Zhou Y; Nussinov R; Eng C; Cheng F
    PLoS Comput Biol; 2020 Feb; 16(2):e1007701. PubMed ID: 32101536
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Prediction of oncogenic interactions and cancer-related signaling networks based on network topology.
    Acencio ML; Bovolenta LA; Camilo E; Lemke N
    PLoS One; 2013; 8(10):e77521. PubMed ID: 24204854
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Association mining of mutated cancer genes in different clinical stages across 11 cancer types.
    Hu W; Li X; Wang T; Zheng S
    Oncotarget; 2016 Oct; 7(42):68270-68277. PubMed ID: 27556693
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Simultaneous identification of multiple driver pathways in cancer.
    Leiserson MD; Blokh D; Sharan R; Raphael BJ
    PLoS Comput Biol; 2013; 9(5):e1003054. PubMed ID: 23717195
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Integrating mutation and gene expression cross-sectional data to infer cancer progression.
    Fleck JL; Pavel AB; Cassandras CG
    BMC Syst Biol; 2016 Jan; 10():12. PubMed ID: 26810975
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Network analysis of genomic alteration profiles reveals co-altered functional modules and driver genes for glioblastoma.
    Gu Y; Wang H; Qin Y; Zhang Y; Zhao W; Qi L; Zhang Y; Wang C; Guo Z
    Mol Biosyst; 2013 Mar; 9(3):467-77. PubMed ID: 23344900
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Computational approaches for the identification of cancer genes and pathways.
    Dimitrakopoulos CM; Beerenwinkel N
    Wiley Interdiscip Rev Syst Biol Med; 2017 Jan; 9(1):. PubMed ID: 27863091
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A novel network regularized matrix decomposition method to detect mutated cancer genes in tumour samples with inter-patient heterogeneity.
    Xi J; Li A; Wang M
    Sci Rep; 2017 Jun; 7(1):2855. PubMed ID: 28588243
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression.
    Poole W; Leinonen K; Shmulevich I; Knijnenburg TA; Bernard B
    PLoS Comput Biol; 2017 Feb; 13(2):e1005347. PubMed ID: 28170390
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Integrating Protein-Protein Interaction Networks and Somatic Mutation Data to Detect Driver Modules in Pan-Cancer.
    Wu H; Chen Z; Wu Y; Zhang H; Liu Q
    Interdiscip Sci; 2022 Mar; 14(1):151-167. PubMed ID: 34491536
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Combinatorial patterns of somatic gene mutations in cancer.
    Yeang CH; McCormick F; Levine A
    FASEB J; 2008 Aug; 22(8):2605-22. PubMed ID: 18434431
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks.
    Hodzic E; Shrestha R; Zhu K; Cheng K; Collins CC; Cenk Sahinalp S
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30978274
    [TBL] [Abstract][Full Text] [Related]  

  • 37. CM-viewer: Visualizing interaction network of co-mutated and mutually exclusively mutated cancer genes.
    Zhou N; Hu Z; Wu C; Bao J
    Biosystems; 2018 Apr; 166():37-42. PubMed ID: 29278730
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Network-based stratification analysis of 13 major cancer types using mutations in panels of cancer genes.
    Zhong X; Yang H; Zhao S; Shyr Y; Li B
    BMC Genomics; 2015; 16 Suppl 7(Suppl 7):S7. PubMed ID: 26099277
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Cancer subtype identification using somatic mutation data.
    Kuijjer ML; Paulson JN; Salzman P; Ding W; Quackenbush J
    Br J Cancer; 2018 May; 118(11):1492-1501. PubMed ID: 29765148
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Pathway and network analysis of more than 2500 whole cancer genomes.
    Reyna MA; Haan D; Paczkowska M; Verbeke LPC; Vazquez M; Kahraman A; Pulido-Tamayo S; Barenboim J; Wadi L; Dhingra P; Shrestha R; Getz G; Lawrence MS; Pedersen JS; Rubin MA; Wheeler DA; Brunak S; Izarzugaza JMG; Khurana E; Marchal K; von Mering C; Sahinalp SC; Valencia A; ; Reimand J; Stuart JM; Raphael BJ;
    Nat Commun; 2020 Feb; 11(1):729. PubMed ID: 32024854
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 48.