BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

284 related articles for article (PubMed ID: 25504322)

  • 1. 5-Formylcytosine alters the structure of the DNA double helix.
    Raiber EA; Murat P; Chirgadze DY; Beraldi D; Luisi BF; Balasubramanian S
    Nat Struct Mol Biol; 2015 Jan; 22(1):44-49. PubMed ID: 25504322
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Differential stabilities and sequence-dependent base pair opening dynamics of Watson-Crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine.
    Szulik MW; Pallan PS; Nocek B; Voehler M; Banerjee S; Brooks S; Joachimiak A; Egli M; Eichman BF; Stone MP
    Biochemistry; 2015 Feb; 54(5):1294-305. PubMed ID: 25632825
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.
    Raiber EA; Beraldi D; Ficz G; Burgess HE; Branco MR; Murat P; Oxley D; Booth MJ; Reik W; Balasubramanian S
    Genome Biol; 2012 Aug; 13(8):R69. PubMed ID: 22902005
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structural Basis for Excision of 5-Formylcytosine by Thymine DNA Glycosylase.
    Pidugu LS; Flowers JW; Coey CT; Pozharski E; Greenberg MM; Drohat AC
    Biochemistry; 2016 Nov; 55(45):6205-6208. PubMed ID: 27805810
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Epigenetic Modifications of Cytosine: Biophysical Properties, Regulation, and Function in Mammalian DNA.
    Hardwick JS; Lane AN; Brown T
    Bioessays; 2018 Mar; 40(3):. PubMed ID: 29369386
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Weakened N3 Hydrogen Bonding by 5-Formylcytosine and 5-Carboxylcytosine Reduces Their Base-Pairing Stability.
    Dai Q; Sanstead PJ; Peng CS; Han D; He C; Tokmakoff A
    ACS Chem Biol; 2016 Feb; 11(2):470-7. PubMed ID: 26641274
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chromatin Structure and the Pioneering Transcription Factor FOXA1 Regulate TDG-Mediated Removal of 5-Formylcytosine from DNA.
    Deckard CE; Banerjee DR; Sczepanski JT
    J Am Chem Soc; 2019 Sep; 141(36):14110-14114. PubMed ID: 31460763
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation.
    Hashimoto H; Hong S; Bhagwat AS; Zhang X; Cheng X
    Nucleic Acids Res; 2012 Nov; 40(20):10203-14. PubMed ID: 22962365
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural insight into substrate preference for TET-mediated oxidation.
    Hu L; Lu J; Cheng J; Rao Q; Li Z; Hou H; Lou Z; Zhang L; Li W; Gong W; Liu M; Sun C; Yin X; Li J; Tan X; Wang P; Wang Y; Fang D; Cui Q; Yang P; He C; Jiang H; Luo C; Xu Y
    Nature; 2015 Nov; 527(7576):118-22. PubMed ID: 26524525
    [TBL] [Abstract][Full Text] [Related]  

  • 10. 5-Formylcytosine does not change the global structure of DNA.
    Hardwick JS; Ptchelkine D; El-Sagheer AH; Tear I; Singleton D; Phillips SEV; Lane AN; Brown T
    Nat Struct Mol Biol; 2017 Jun; 24(6):544-552. PubMed ID: 28504696
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Whole-Genome Mapping of Epigenetic Modification of 5-Formylcytosine at Single-Base Resolution by Chemical Labeling Enrichment and Deamination Sequencing.
    Ding JH; Li G; Xiong J; Liu FL; Xie NB; Ji TT; Wang M; Guo X; Feng YQ; Ci W; Yuan BF
    Anal Chem; 2024 Mar; 96(11):4726-4735. PubMed ID: 38450632
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Thymine DNA glycosylase recognizes the geometry alteration of minor grooves induced by 5-formylcytosine and 5-carboxylcytosine.
    Fu T; Liu L; Yang QL; Wang Y; Xu P; Zhang L; Liu S; Dai Q; Ji Q; Xu GL; He C; Luo C; Zhang L
    Chem Sci; 2019 Aug; 10(31):7407-7417. PubMed ID: 31489163
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing.
    Wu H; Wu X; Shen L; Zhang Y
    Nat Biotechnol; 2014 Dec; 32(12):1231-40. PubMed ID: 25362244
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming.
    Song CX; Szulwach KE; Dai Q; Fu Y; Mao SQ; Lin L; Street C; Li Y; Poidevin M; Wu H; Gao J; Liu P; Li L; Xu GL; Jin P; He C
    Cell; 2013 Apr; 153(3):678-91. PubMed ID: 23602153
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Nei-like 1 (NEIL1) excises 5-carboxylcytosine directly and stimulates TDG-mediated 5-formyl and 5-carboxylcytosine excision.
    Slyvka A; Mierzejewska K; Bochtler M
    Sci Rep; 2017 Aug; 7(1):9001. PubMed ID: 28827588
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex.
    Wang L; Zhou Y; Xu L; Xiao R; Lu X; Chen L; Chong J; Li H; He C; Fu XD; Wang D
    Nature; 2015 Jul; 523(7562):621-5. PubMed ID: 26123024
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Crystal structure of human methyl-binding domain IV glycosylase bound to abasic DNA.
    Manvilla BA; Maiti A; Begley MC; Toth EA; Drohat AC
    J Mol Biol; 2012 Jul; 420(3):164-75. PubMed ID: 22560993
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Base-resolution profiling of active DNA demethylation using MAB-seq and caMAB-seq.
    Wu H; Wu X; Zhang Y
    Nat Protoc; 2016 Jun; 11(6):1081-100. PubMed ID: 27172168
    [TBL] [Abstract][Full Text] [Related]  

  • 19. In vivo genome-wide profiling reveals a tissue-specific role for 5-formylcytosine.
    Iurlaro M; McInroy GR; Burgess HE; Dean W; Raiber EA; Bachman M; Beraldi D; Balasubramanian S; Reik W
    Genome Biol; 2016 Jun; 17(1):141. PubMed ID: 27356509
    [TBL] [Abstract][Full Text] [Related]  

  • 20. 5-Formylcytosine-induced DNA-peptide cross-links reduce transcription efficiency, but do not cause transcription errors in human cells.
    Ji S; Park D; Kropachev K; Kolbanovskiy M; Fu I; Broyde S; Essawy M; Geacintov NE; Tretyakova NY
    J Biol Chem; 2019 Nov; 294(48):18387-18397. PubMed ID: 31597704
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.