150 related articles for article (PubMed ID: 25505094)
1. Detection of circular permutations within protein structures using CE-CP.
Bliven SE; Bourne PE; Prlić A
Bioinformatics; 2015 Apr; 31(8):1316-8. PubMed ID: 25505094
[TBL] [Abstract][Full Text] [Related]
2. Pre-calculated protein structure alignments at the RCSB PDB website.
Prlic A; Bliven S; Rose PW; Bluhm WF; Bizon C; Godzik A; Bourne PE
Bioinformatics; 2010 Dec; 26(23):2983-5. PubMed ID: 20937596
[TBL] [Abstract][Full Text] [Related]
3. BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.
Gao J; Prlic A; Bi C; Bluhm WF; Dimitropoulos D; Xu D; Bourne PE; Rose PW
Bioinformatics; 2017 Jul; 33(13):2047-2049. PubMed ID: 28334105
[TBL] [Abstract][Full Text] [Related]
4. RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments.
Bittrich S; Segura J; Duarte JM; Burley SK; Rose Y
Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38870521
[TBL] [Abstract][Full Text] [Related]
5. Systematic detection of internal symmetry in proteins using CE-Symm.
Myers-Turnbull D; Bliven SE; Rose PW; Aziz ZK; Youkharibache P; Bourne PE; Prlić A
J Mol Biol; 2014 May; 426(11):2255-68. PubMed ID: 24681267
[TBL] [Abstract][Full Text] [Related]
6. SeqCP: A sequence-based algorithm for searching circularly permuted proteins.
Chen CC; Huang YW; Huang HC; Lo WC; Lyu PC
Comput Struct Biotechnol J; 2023; 21():185-201. PubMed ID: 36582435
[TBL] [Abstract][Full Text] [Related]
7. BioJava: an open-source framework for bioinformatics.
Holland RC; Down TA; Pocock M; Prlić A; Huen D; James K; Foisy S; Dräger A; Yates A; Heuer M; Schreiber MJ
Bioinformatics; 2008 Sep; 24(18):2096-7. PubMed ID: 18689808
[TBL] [Abstract][Full Text] [Related]
8. BioJava: an open-source framework for bioinformatics in 2012.
Prlić A; Yates A; Bliven SE; Rose PW; Jacobsen J; Troshin PV; Chapman M; Gao J; Koh CH; Foisy S; Holland R; Rimsa G; Heuer ML; Brandstätter-Müller H; Bourne PE; Willis S
Bioinformatics; 2012 Oct; 28(20):2693-5. PubMed ID: 22877863
[TBL] [Abstract][Full Text] [Related]
9. BioJava 5: A community driven open-source bioinformatics library.
Lafita A; Bliven S; Prlić A; Guzenko D; Rose PW; Bradley A; Pavan P; Myers-Turnbull D; Valasatava Y; Heuer M; Larson M; Burley SK; Duarte JM
PLoS Comput Biol; 2019 Feb; 15(2):e1006791. PubMed ID: 30735498
[TBL] [Abstract][Full Text] [Related]
10. Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
Prlic A; Kalro T; Bhattacharya R; Christie C; Burley SK; Rose PW
Bioinformatics; 2016 Dec; 32(24):3833-3835. PubMed ID: 27551105
[TBL] [Abstract][Full Text] [Related]
11. A simple algorithm for detecting circular permutations in proteins.
Uliel S; Fliess A; Amir A; Unger R
Bioinformatics; 1999 Nov; 15(11):930-6. PubMed ID: 10743559
[TBL] [Abstract][Full Text] [Related]
12. RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.
Quinn GB; Bi C; Christie CH; Pang K; Prlić A; Nakane T; Zardecki C; Voigt M; Berman HM; Bourne PE; Rose PW
Bioinformatics; 2015 Jan; 31(1):126-7. PubMed ID: 25183487
[TBL] [Abstract][Full Text] [Related]
13. Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison.
Chen L; Wu LY; Wang Y; Zhang S; Zhang XS
BMC Struct Biol; 2006 Sep; 6():18. PubMed ID: 16948858
[TBL] [Abstract][Full Text] [Related]
14. Rapid motif-based prediction of circular permutations in multi-domain proteins.
Weiner J; Thomas G; Bornberg-Bauer E
Bioinformatics; 2005 Apr; 21(7):932-7. PubMed ID: 15788783
[TBL] [Abstract][Full Text] [Related]
15. The RCSB Protein Data Bank: new resources for research and education.
Rose PW; Bi C; Bluhm WF; Christie CH; Dimitropoulos D; Dutta S; Green RK; Goodsell DS; Prlic A; Quesada M; Quinn GB; Ramos AG; Westbrook JD; Young J; Zardecki C; Berman HM; Bourne PE
Nucleic Acids Res; 2013 Jan; 41(Database issue):D475-82. PubMed ID: 23193259
[TBL] [Abstract][Full Text] [Related]
16. Comparative analysis of protein structure alignments.
Mayr G; Domingues FS; Lackner P
BMC Struct Biol; 2007 Jul; 7():50. PubMed ID: 17672887
[TBL] [Abstract][Full Text] [Related]
17. DBAli tools: mining the protein structure space.
Marti-Renom MA; Pieper U; Madhusudhan MS; Rossi A; Eswar N; Davis FP; Al-Shahrour F; Dopazo J; Sali A
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W393-7. PubMed ID: 17478513
[TBL] [Abstract][Full Text] [Related]
18. PyPDB: a Python API for the Protein Data Bank.
Gilpin W
Bioinformatics; 2016 Jan; 32(1):159-60. PubMed ID: 26369703
[TBL] [Abstract][Full Text] [Related]
19. SANA: an algorithm for sequential and non-sequential protein structure alignment.
Wang L; Wu LY; Wang Y; Zhang XS; Chen L
Amino Acids; 2010 Jul; 39(2):417-25. PubMed ID: 20127263
[TBL] [Abstract][Full Text] [Related]
20. AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.
Hosny A; Vera-Licona P; Laubenbacher R; Favre T
Bioinformatics; 2016 Aug; 32(15):2396-8. PubMed ID: 27153722
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]