These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

140 related articles for article (PubMed ID: 25506399)

  • 1. Nucleosomes are enriched at the boundaries of hypomethylated regions (HMRs) in mouse dermal fibroblasts and keratinocytes.
    He X; Chatterjee R; Tillo D; Smith A; FitzGerald P; Vinson C
    Epigenetics Chromatin; 2014; 7(1):34. PubMed ID: 25506399
    [TBL] [Abstract][Full Text] [Related]  

  • 2. High-resolution genome-wide DNA methylation maps of mouse primary female dermal fibroblasts and keratinocytes.
    Chatterjee R; He X; Huang D; FitzGerald P; Smith A; Vinson C
    Epigenetics Chromatin; 2014; 7():35. PubMed ID: 25699092
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Links between DNA methylation and nucleosome occupancy in the human genome.
    Collings CK; Anderson JN
    Epigenetics Chromatin; 2017; 10():18. PubMed ID: 28413449
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Cross-tissue patterns of DNA hypomethylation reveal genetically distinct histories of cell development.
    Scott TJ; Hansen TJ; McArthur E; Hodges E
    BMC Genomics; 2023 Oct; 24(1):623. PubMed ID: 37858046
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns.
    Zhou Y; Liu S; Hu Y; Fang L; Gao Y; Xia H; Schroeder SG; Rosen BD; Connor EE; Li CJ; Baldwin RL; Cole JB; Van Tassell CP; Yang L; Ma L; Liu GE
    BMC Biol; 2020 Jul; 18(1):85. PubMed ID: 32631327
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Defining Regulatory Elements in the Human Genome Using Nucleosome Occupancy and Methylome Sequencing (NOMe-Seq).
    Rhie SK; Schreiner S; Farnham PJ
    Methods Mol Biol; 2018; 1766():209-229. PubMed ID: 29605855
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Fundamental diversity of human CpG islands at multiple biological levels.
    Zeng J; Nagrajan HK; Yi SV
    Epigenetics; 2014 Apr; 9(4):483-91. PubMed ID: 24419148
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development.
    Teif VB; Beshnova DA; Vainshtein Y; Marth C; Mallm JP; Höfer T; Rippe K
    Genome Res; 2014 Aug; 24(8):1285-95. PubMed ID: 24812327
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding.
    He X; Chatterjee R; John S; Bravo H; Sathyanarayana BK; Biddie SC; FitzGerald PC; Stamatoyannopoulos JA; Hager GL; Vinson C
    BMC Genomics; 2013 Jun; 14():428. PubMed ID: 23805837
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer.
    Sharmin M; Bravo HC; Hannenhalli S
    BMC Cancer; 2016 Feb; 16():88. PubMed ID: 26868017
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ubiquitous human 'master' origins of replication are encoded in the DNA sequence via a local enrichment in nucleosome excluding energy barriers.
    Drillon G; Audit B; Argoul F; Arneodo A
    J Phys Condens Matter; 2015 Feb; 27(6):064102. PubMed ID: 25563930
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer.
    Taberlay PC; Statham AL; Kelly TK; Clark SJ; Jones PA
    Genome Res; 2014 Sep; 24(9):1421-32. PubMed ID: 24916973
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA.
    Osakabe A; Adachi F; Arimura Y; Maehara K; Ohkawa Y; Kurumizaka H
    Open Biol; 2015 Oct; 5(10):. PubMed ID: 26446621
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes.
    Bettecken T; Frenkel ZM; Trifonov EN
    BMC Genomics; 2011 May; 12(1):273. PubMed ID: 21627783
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Methylated Cytosines Mutate to Transcription Factor Binding Sites that Drive Tetrapod Evolution.
    He X; Tillo D; Vierstra J; Syed KS; Deng C; Ray GJ; Stamatoyannopoulos J; FitzGerald PC; Vinson C
    Genome Biol Evol; 2015 Oct; 7(11):3155-69. PubMed ID: 26507798
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Effects of DNA methylation on nucleosome stability.
    Collings CK; Waddell PJ; Anderson JN
    Nucleic Acids Res; 2013 Mar; 41(5):2918-31. PubMed ID: 23355616
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mapping nucleosome positions using DNase-seq.
    Zhong J; Luo K; Winter PS; Crawford GE; Iversen ES; Hartemink AJ
    Genome Res; 2016 Mar; 26(3):351-64. PubMed ID: 26772197
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Asymmetric nucleosomes flank promoters in the budding yeast genome.
    Ramachandran S; Zentner GE; Henikoff S
    Genome Res; 2015 Mar; 25(3):381-90. PubMed ID: 25491770
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element.
    Salih F; Salih B; Kogan S; Trifonov EN
    J Biomol Struct Dyn; 2008 Aug; 26(1):9-16. PubMed ID: 18533722
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals.
    Halder K; Halder R; Chowdhury S
    Mol Biosyst; 2009 Dec; 5(12):1703-12. PubMed ID: 19587895
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.