These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
218 related articles for article (PubMed ID: 25521810)
21. SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner. Luo R; Wong T; Zhu J; Liu CM; Zhu X; Wu E; Lee LK; Lin H; Zhu W; Cheung DW; Ting HF; Yiu SM; Peng S; Yu C; Li Y; Li R; Lam TW PLoS One; 2013; 8(5):e65632. PubMed ID: 23741504 [TBL] [Abstract][Full Text] [Related]
22. A Survey of Software and Hardware Approaches to Performing Read Alignment in Next Generation Sequencing. Al Kawam A; Khatri S; Datta A IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1202-1213. PubMed ID: 27362989 [TBL] [Abstract][Full Text] [Related]
23. Variant Review with the Integrative Genomics Viewer. Robinson JT; Thorvaldsdóttir H; Wenger AM; Zehir A; Mesirov JP Cancer Res; 2017 Nov; 77(21):e31-e34. PubMed ID: 29092934 [TBL] [Abstract][Full Text] [Related]
24. TotalReCaller: improved accuracy and performance via integrated alignment and base-calling. Menges F; Narzisi G; Mishra B Bioinformatics; 2011 Sep; 27(17):2330-7. PubMed ID: 21724593 [TBL] [Abstract][Full Text] [Related]
25. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing. Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325 [TBL] [Abstract][Full Text] [Related]
30. SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing Data. Abuín JM; Pichel JC; Pena TF; Amigo J PLoS One; 2016; 11(5):e0155461. PubMed ID: 27182962 [TBL] [Abstract][Full Text] [Related]
31. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality. Wu TD; Reeder J; Lawrence M; Becker G; Brauer MJ Methods Mol Biol; 2016; 1418():283-334. PubMed ID: 27008021 [TBL] [Abstract][Full Text] [Related]
32. Review of alignment and SNP calling algorithms for next-generation sequencing data. Mielczarek M; Szyda J J Appl Genet; 2016 Feb; 57(1):71-9. PubMed ID: 26055432 [TBL] [Abstract][Full Text] [Related]
33. A Fast and Scalable Workflow for SNPs Detection in Genome Sequences Using Hadoop Map-Reduce. Tahir M; Sardaraz M Genes (Basel); 2020 Feb; 11(2):. PubMed ID: 32033366 [TBL] [Abstract][Full Text] [Related]
34. SOAP2: an improved ultrafast tool for short read alignment. Li R; Yu C; Li Y; Lam TW; Yiu SM; Kristiansen K; Wang J Bioinformatics; 2009 Aug; 25(15):1966-7. PubMed ID: 19497933 [TBL] [Abstract][Full Text] [Related]
36. PipeMEM: A Framework to Speed Up BWA-MEM in Spark with Low Overhead. Zhang L; Liu C; Dong S Genes (Basel); 2019 Nov; 10(11):. PubMed ID: 31689965 [TBL] [Abstract][Full Text] [Related]
37. Challenges in exome analysis by LifeScope and its alternative computational pipelines. Pranckevičiene E; Rančelis T; Pranculis A; Kučinskas V BMC Res Notes; 2015 Sep; 8():421. PubMed ID: 26346699 [TBL] [Abstract][Full Text] [Related]
38. Supercomputing for the parallelization of whole genome analysis. Puckelwartz MJ; Pesce LL; Nelakuditi V; Dellefave-Castillo L; Golbus JR; Day SM; Cappola TP; Dorn GW; Foster IT; McNally EM Bioinformatics; 2014 Jun; 30(11):1508-13. PubMed ID: 24526712 [TBL] [Abstract][Full Text] [Related]
39. Blue: correcting sequencing errors using consensus and context. Greenfield P; Duesing K; Papanicolaou A; Bauer DC Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879 [TBL] [Abstract][Full Text] [Related]
40. VariantBam: filtering and profiling of next-generational sequencing data using region-specific rules. Wala J; Zhang CZ; Meyerson M; Beroukhim R Bioinformatics; 2016 Jul; 32(13):2029-31. PubMed ID: 27153727 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]