159 related articles for article (PubMed ID: 25535680)
1. VennBLAST—whole transcriptome comparison and visualization tool.
Zahavi T; Stelzer G; Strauss L; Salmon AY; Salmon-Divon M
Genomics; 2015 Mar; 105(3):131-6. PubMed ID: 25535680
[TBL] [Abstract][Full Text] [Related]
2. Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project.
Amrit FRG; Ghazi A
J Vis Exp; 2017 Apr; (122):. PubMed ID: 28448031
[TBL] [Abstract][Full Text] [Related]
3. Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures.
Pollier J; Rombauts S; Goossens A
Methods Mol Biol; 2013; 1011():305-15. PubMed ID: 23616006
[TBL] [Abstract][Full Text] [Related]
4. RNA-Seq for transcriptome analysis in non-model plants.
Garg R; Jain M
Methods Mol Biol; 2013; 1069():43-58. PubMed ID: 23996307
[TBL] [Abstract][Full Text] [Related]
5. BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams.
Hulsen T; de Vlieg J; Alkema W
BMC Genomics; 2008 Oct; 9():488. PubMed ID: 18925949
[TBL] [Abstract][Full Text] [Related]
6. Generalized Venn diagrams: a new method of visualizing complex genetic set relations.
Kestler HA; Müller A; Gress TM; Buchholz M
Bioinformatics; 2005 Apr; 21(8):1592-5. PubMed ID: 15572472
[TBL] [Abstract][Full Text] [Related]
7. How to analyze gene expression using RNA-sequencing data.
Ramsköld D; Kavak E; Sandberg R
Methods Mol Biol; 2012; 802():259-74. PubMed ID: 22130886
[TBL] [Abstract][Full Text] [Related]
8. Venn diagrams in bioinformatics.
Jia A; Xu L; Wang Y
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33839742
[TBL] [Abstract][Full Text] [Related]
9. Designing a transcriptome next-generation sequencing project for a nonmodel plant species.
Strickler SR; Bombarely A; Mueller LA
Am J Bot; 2012 Feb; 99(2):257-66. PubMed ID: 22268224
[TBL] [Abstract][Full Text] [Related]
10. RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene.
van Delft J; Gaj S; Lienhard M; Albrecht MW; Kirpiy A; Brauers K; Claessen S; Lizarraga D; Lehrach H; Herwig R; Kleinjans J
Toxicol Sci; 2012 Dec; 130(2):427-39. PubMed ID: 22889811
[TBL] [Abstract][Full Text] [Related]
11. Venn-diaNet : venn diagram based network propagation analysis framework for comparing multiple biological experiments.
Hur B; Kang D; Lee S; Moon JH; Lee G; Kim S
BMC Bioinformatics; 2019 Dec; 20(Suppl 23):667. PubMed ID: 31881980
[TBL] [Abstract][Full Text] [Related]
12. CoverageAnalyzer (CAn): A Tool for Inspection of Modification Signatures in RNA Sequencing Profiles.
Hauenschild R; Werner S; Tserovski L; Hildebrandt A; Motorin Y; Helm M
Biomolecules; 2016 Nov; 6(4):. PubMed ID: 27834909
[TBL] [Abstract][Full Text] [Related]
13. Exploring the transcriptome space of a recombinant BHK cell line through next generation sequencing.
Johnson KC; Yongky A; Vishwanathan N; Jacob NM; Jayapal KP; Goudar CT; Karypis G; Hu WS
Biotechnol Bioeng; 2014 Apr; 111(4):770-81. PubMed ID: 24249083
[TBL] [Abstract][Full Text] [Related]
14. RNA-Seq: revelation of the messengers.
Van Verk MC; Hickman R; Pieterse CM; Van Wees SC
Trends Plant Sci; 2013 Apr; 18(4):175-9. PubMed ID: 23481128
[TBL] [Abstract][Full Text] [Related]
15. A comparison of analog and Next-Generation transcriptomic tools for mammalian studies.
Roy NC; Altermann E; Park ZA; McNabb WC
Brief Funct Genomics; 2011 May; 10(3):135-50. PubMed ID: 21389008
[TBL] [Abstract][Full Text] [Related]
16. CGDV: a webtool for circular visualization of genomics and transcriptomics data.
Jha V; Singh G; Kumar S; Sonawane A; Jere A; Anamika K
BMC Genomics; 2017 Oct; 18(1):823. PubMed ID: 29065857
[TBL] [Abstract][Full Text] [Related]
17. [Transcriptomes for serial analysis of gene expression].
Marti J; Piquemal D; Manchon L; Commes T
J Soc Biol; 2002; 196(4):303-7. PubMed ID: 12645300
[TBL] [Abstract][Full Text] [Related]
18. VennDIS: a JavaFX-based Venn and Euler diagram software to generate publication quality figures.
Ignatchenko V; Ignatchenko A; Sinha A; Boutros PC; Kislinger T
Proteomics; 2015 Apr; 15(7):1239-44. PubMed ID: 25545689
[TBL] [Abstract][Full Text] [Related]
19. Quantitative transcriptome analysis using RNA-seq.
Külahoglu C; Bräutigam A
Methods Mol Biol; 2014; 1158():71-91. PubMed ID: 24792045
[TBL] [Abstract][Full Text] [Related]
20. Transcriptome analysis using RNA-Seq.
Hoeijmakers WA; Bártfai R; Stunnenberg HG
Methods Mol Biol; 2013; 923():221-39. PubMed ID: 22990781
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]