141 related articles for article (PubMed ID: 25546441)
1. Evaluation of transmembrane helix predictions in 2014.
Reeb J; Kloppmann E; Bernhofer M; Rost B
Proteins; 2015 Mar; 83(3):473-84. PubMed ID: 25546441
[TBL] [Abstract][Full Text] [Related]
2. How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
Park Y; Helms V
Biopolymers; 2006 Nov; 83(4):389-99. PubMed ID: 16838301
[TBL] [Abstract][Full Text] [Related]
3. TOPTMH: topology predictor for transmembrane alpha-helices.
Ahmed R; Rangwala H; Karypis G
J Bioinform Comput Biol; 2010 Feb; 8(1):39-57. PubMed ID: 20183873
[TBL] [Abstract][Full Text] [Related]
4. Improved helix and kink characterization in membrane proteins allows evaluation of kink sequence predictors.
Langelaan DN; Wieczorek M; Blouin C; Rainey JK
J Chem Inf Model; 2010 Dec; 50(12):2213-20. PubMed ID: 21090591
[TBL] [Abstract][Full Text] [Related]
5. Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks.
Fuchs A; Kirschner A; Frishman D
Proteins; 2009 Mar; 74(4):857-71. PubMed ID: 18704938
[TBL] [Abstract][Full Text] [Related]
6. Transmembrane helix and topology prediction using hierarchical SVM classifiers and an alternating geometric scoring function.
Lo A; Chiu HS; Sung TY; Hsu WL
Comput Syst Bioinformatics Conf; 2006; ():31-42. PubMed ID: 17369623
[TBL] [Abstract][Full Text] [Related]
7. TMSEG: Novel prediction of transmembrane helices.
Bernhofer M; Kloppmann E; Reeb J; Rost B
Proteins; 2016 Nov; 84(11):1706-1716. PubMed ID: 27566436
[TBL] [Abstract][Full Text] [Related]
8. Sequence and conformational preferences at termini of α-helices in membrane proteins: role of the helix environment.
Shelar A; Bansal M
Proteins; 2014 Dec; 82(12):3420-36. PubMed ID: 25257385
[TBL] [Abstract][Full Text] [Related]
9. Transmembrane helix predictions revisited.
Chen CP; Kernytsky A; Rost B
Protein Sci; 2002 Dec; 11(12):2774-91. PubMed ID: 12441377
[TBL] [Abstract][Full Text] [Related]
10. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
Bagos PG; Liakopoulos TD; Hamodrakas SJ
BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
[TBL] [Abstract][Full Text] [Related]
11. Prediction of transmembrane helix orientation in polytopic membrane proteins.
Adamian L; Liang J
BMC Struct Biol; 2006 Jun; 6():13. PubMed ID: 16792816
[TBL] [Abstract][Full Text] [Related]
12. Predicting the topology of transmembrane helical proteins using mean burial propensity and a hidden-Markov-model-based method.
Zhou H; Zhou Y
Protein Sci; 2003 Jul; 12(7):1547-55. PubMed ID: 12824500
[TBL] [Abstract][Full Text] [Related]
13. Combined prediction of transmembrane topology and signal peptide of beta-barrel proteins: using a hidden Markov model and genetic algorithms.
Zou L; Wang Z; Wang Y; Hu F
Comput Biol Med; 2010 Jul; 40(7):621-8. PubMed ID: 20488436
[TBL] [Abstract][Full Text] [Related]
14. State-of-the-art in membrane protein prediction.
Chen CP; Rost B
Appl Bioinformatics; 2002; 1(1):21-35. PubMed ID: 15130854
[TBL] [Abstract][Full Text] [Related]
15. SOMPNN: an efficient non-parametric model for predicting transmembrane helices.
Yu DJ; Shen HB; Yang JY
Amino Acids; 2012 Jun; 42(6):2195-205. PubMed ID: 21695537
[TBL] [Abstract][Full Text] [Related]
16. A hidden Markov model with molecular mechanics energy-scoring function for transmembrane helix prediction.
Zheng WJ; Spassov VZ; Yan L; Flook PK; Szalma S
Comput Biol Chem; 2004 Oct; 28(4):265-74. PubMed ID: 15548453
[TBL] [Abstract][Full Text] [Related]
17. The use of soluble protein structures in modeling helical proteins in a layered membrane.
Lee HW; Lee HC; Lee LK; Teber ET; Church WB
J Biomol Struct Dyn; 2014; 32(2):308-18. PubMed ID: 23527746
[TBL] [Abstract][Full Text] [Related]
18. String kernels and high-quality data set for improved prediction of kinked helices in α-helical membrane proteins.
Kneissl B; Mueller SC; Tautermann CS; Hildebrandt A
J Chem Inf Model; 2011 Nov; 51(11):3017-25. PubMed ID: 21981602
[TBL] [Abstract][Full Text] [Related]
19. Computational differentiation of N-terminal signal peptides and transmembrane helices.
Yuan Z; Davis MJ; Zhang F; Teasdale RD
Biochem Biophys Res Commun; 2003 Dec; 312(4):1278-83. PubMed ID: 14652012
[TBL] [Abstract][Full Text] [Related]
20. Predicting Alpha Helical Transmembrane Proteins Using HMMs.
Tsaousis GN; Theodoropoulou MC; Hamodrakas SJ; Bagos PG
Methods Mol Biol; 2017; 1552():63-82. PubMed ID: 28224491
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]