BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

646 related articles for article (PubMed ID: 25549184)

  • 1. Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples.
    Lim YW; Haynes M; Furlan M; Robertson CE; Harris JK; Rohwer F
    J Vis Exp; 2014 Dec; (94):. PubMed ID: 25549184
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
    J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details.
    Feigelman R; Kahlert CR; Baty F; Rassouli F; Kleiner RL; Kohler P; Brutsche MH; von Mering C
    Microbiome; 2017 Feb; 5(1):20. PubMed ID: 28187782
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The metabolic footprint of the airway bacterial community in cystic fibrosis.
    Narayanamurthy V; Sweetnam JM; Denner DR; Chen LW; Naureckas ET; Laxman B; White SR
    Microbiome; 2017 Jun; 5(1):67. PubMed ID: 28666467
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Fungal and Bacterial Diversity of Airway Microbiota in Adults with Cystic Fibrosis: Concordance Between Conventional Methods and Ultra-Deep Sequencing, and Their Practical use in the Clinical Laboratory.
    Botterel F; Angebault C; Cabaret O; Stressmann FA; Costa JM; Wallet F; Wallaert B; Bruce K; Delhaes L
    Mycopathologia; 2018 Feb; 183(1):171-183. PubMed ID: 28766039
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities.
    Lim YW; Schmieder R; Haynes M; Willner D; Furlan M; Youle M; Abbott K; Edwards R; Evangelista J; Conrad D; Rohwer F
    J Cyst Fibros; 2013 Mar; 12(2):154-64. PubMed ID: 22951208
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
    Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
    OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Impact of DNA extraction, sample dilution, and reagent contamination on 16S rRNA gene sequencing of human feces.
    Velásquez-Mejía EP; de la Cuesta-Zuluaga J; Escobar JS
    Appl Microbiol Biotechnol; 2018 Jan; 102(1):403-411. PubMed ID: 29079861
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
    Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
    Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections.
    Salipante SJ; Sengupta DJ; Rosenthal C; Costa G; Spangler J; Sims EH; Jacobs MA; Miller SI; Hoogestraat DR; Cookson BT; McCoy C; Matsen FA; Shendure J; Lee CC; Harkins TT; Hoffman NG
    PLoS One; 2013; 8(5):e65226. PubMed ID: 23734239
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C; Sadowsky MJ
    J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Use of internal standards for quantitative metatranscriptome and metagenome analysis.
    Satinsky BM; Gifford SM; Crump BC; Moran MA
    Methods Enzymol; 2013; 531():237-50. PubMed ID: 24060124
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies.
    Brooks JP; Edwards DJ; Harwich MD; Rivera MC; Fettweis JM; Serrano MG; Reris RA; Sheth NU; Huang B; Girerd P; ; Strauss JF; Jefferson KK; Buck GA
    BMC Microbiol; 2015 Mar; 15():66. PubMed ID: 25880246
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples.
    Uyaguari-Diaz MI; Chan M; Chaban BL; Croxen MA; Finke JF; Hill JE; Peabody MA; Van Rossum T; Suttle CA; Brinkman FS; Isaac-Renton J; Prystajecky NA; Tang P
    Microbiome; 2016 Jul; 4(1):20. PubMed ID: 27391119
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Host DNA depletion efficiency of microbiome DNA enrichment methods in infected tissue samples.
    Heravi FS; Zakrzewski M; Vickery K; Hu H
    J Microbiol Methods; 2020 Mar; 170():105856. PubMed ID: 32007505
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DNA-, RNA-, and Protein-Based Stable-Isotope Probing for High-Throughput Biomarker Analysis of Active Microorganisms.
    Jameson E; Taubert M; Coyotzi S; Chen Y; Eyice Ö; Schäfer H; Murrell JC; Neufeld JD; Dumont MG
    Methods Mol Biol; 2017; 1539():57-74. PubMed ID: 27900684
    [TBL] [Abstract][Full Text] [Related]  

  • 17. High throughput sequencing methods for microbiome profiling: application to food animal systems.
    Highlander SK
    Anim Health Res Rev; 2012 Jun; 13(1):40-53. PubMed ID: 22853944
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota.
    Whelan FJ; Waddell B; Syed SA; Shekarriz S; Rabin HR; Parkins MD; Surette MG
    Nat Microbiol; 2020 Feb; 5(2):379-390. PubMed ID: 31959969
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods.
    Zemanick ET; Wagner BD; Robertson CE; Stevens MJ; Szefler SJ; Accurso FJ; Sagel SD; Harris JK
    Ann Am Thorac Soc; 2015 Feb; 12(2):221-9. PubMed ID: 25474078
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evaluation of Host Depletion and Extraction Methods for Shotgun Metagenomic Analysis of Bovine Vaginal Samples.
    Ong CT; Boe-Hansen G; Ross EM; Blackall PJ; Turni C; Hayes BJ; Tabor AE
    Microbiol Spectr; 2022 Apr; 10(2):e0041221. PubMed ID: 35404108
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 33.