223 related articles for article (PubMed ID: 25550432)
1. Five checkpoints maintaining the fidelity of transcription by RNA polymerases in structural and energetic details.
Wang B; Opron K; Burton ZF; Cukier RI; Feig M
Nucleic Acids Res; 2015 Jan; 43(2):1133-46. PubMed ID: 25550432
[TBL] [Abstract][Full Text] [Related]
2. Closing and opening of the RNA polymerase trigger loop.
Mazumder A; Lin M; Kapanidis AN; Ebright RH
Proc Natl Acad Sci U S A; 2020 Jul; 117(27):15642-15649. PubMed ID: 32571927
[TBL] [Abstract][Full Text] [Related]
3. Mismatched base-pair simulations for ASFV Pol X/DNA complexes help interpret frequent G*G misincorporation.
Sampoli Benítez BA; Arora K; Balistreri L; Schlick T
J Mol Biol; 2008 Dec; 384(5):1086-97. PubMed ID: 18955064
[TBL] [Abstract][Full Text] [Related]
4. RNA polymerase fidelity and transcriptional proofreading.
Sydow JF; Cramer P
Curr Opin Struct Biol; 2009 Dec; 19(6):732-9. PubMed ID: 19914059
[TBL] [Abstract][Full Text] [Related]
5. T7 RNA Polymerase Discriminates Correct and Incorrect Nucleoside Triphosphates by Free Energy.
Wu S; Wang J; Pu X; Li L; Li Q
Biophys J; 2018 Apr; 114(8):1755-1761. PubMed ID: 29694856
[TBL] [Abstract][Full Text] [Related]
6. Template misalignment in multisubunit RNA polymerases and transcription fidelity.
Kashkina E; Anikin M; Brueckner F; Pomerantz RT; McAllister WT; Cramer P; Temiakov D
Mol Cell; 2006 Oct; 24(2):257-66. PubMed ID: 17052459
[TBL] [Abstract][Full Text] [Related]
7. Trigger loop of RNA polymerase is a positional, not acid-base, catalyst for both transcription and proofreading.
Mishanina TV; Palo MZ; Nayak D; Mooney RA; Landick R
Proc Natl Acad Sci U S A; 2017 Jun; 114(26):E5103-E5112. PubMed ID: 28607053
[TBL] [Abstract][Full Text] [Related]
8. Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase.
Seibold SA; Singh BN; Zhang C; Kireeva M; Domecq C; Bouchard A; Nazione AM; Feig M; Cukier RI; Coulombe B; Kashlev M; Hampsey M; Burton ZF
Biochim Biophys Acta; 2010 Aug; 1799(8):575-87. PubMed ID: 20478425
[TBL] [Abstract][Full Text] [Related]
9. Mismatch-induced conformational distortions in polymerase beta support an induced-fit mechanism for fidelity.
Arora K; Beard WA; Wilson SH; Schlick T
Biochemistry; 2005 Oct; 44(40):13328-41. PubMed ID: 16201758
[TBL] [Abstract][Full Text] [Related]
10. Transcript-assisted transcriptional proofreading.
Zenkin N; Yuzenkova Y; Severinov K
Science; 2006 Jul; 313(5786):518-20. PubMed ID: 16873663
[TBL] [Abstract][Full Text] [Related]
11. A dynamic model for processive transcription elongation and backtracking long pauses by multisubunit RNA polymerases.
Xie P
Proteins; 2012 Aug; 80(8):2020-34. PubMed ID: 22488837
[TBL] [Abstract][Full Text] [Related]
12. Kinetics of nucleotide entry into RNA polymerase active site provides mechanism for efficiency and fidelity.
Wang B; Sexton RE; Feig M
Biochim Biophys Acta Gene Regul Mech; 2017 Apr; 1860(4):482-490. PubMed ID: 28242207
[TBL] [Abstract][Full Text] [Related]
13. Active site closure stabilizes the backtracked state of RNA polymerase.
Turtola M; Mäkinen JJ; Belogurov GA
Nucleic Acids Res; 2018 Nov; 46(20):10870-10887. PubMed ID: 30256972
[TBL] [Abstract][Full Text] [Related]
14. 8-Oxo-guanine DNA damage induces transcription errors by escaping two distinct fidelity control checkpoints of RNA polymerase II.
Konovalov KA; Pardo-Avila F; Tse CKM; Oh J; Wang D; Huang X
J Biol Chem; 2019 Mar; 294(13):4924-4933. PubMed ID: 30718278
[TBL] [Abstract][Full Text] [Related]
15. RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation.
Feig M; Burton ZF
Biophys J; 2010 Oct; 99(8):2577-86. PubMed ID: 20959099
[TBL] [Abstract][Full Text] [Related]
16. Mechanism of sequence-specific pausing of bacterial RNA polymerase.
Kireeva ML; Kashlev M
Proc Natl Acad Sci U S A; 2009 Jun; 106(22):8900-5. PubMed ID: 19416863
[TBL] [Abstract][Full Text] [Related]
17. Interplay between the trigger loop and the F loop during RNA polymerase catalysis.
Miropolskaya N; Esyunina D; Klimasauskas S; Nikiforov V; Artsimovitch I; Kulbachinskiy A
Nucleic Acids Res; 2014 Jan; 42(1):544-52. PubMed ID: 24089145
[TBL] [Abstract][Full Text] [Related]
18. Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis.
Wang D; Bushnell DA; Westover KD; Kaplan CD; Kornberg RD
Cell; 2006 Dec; 127(5):941-54. PubMed ID: 17129781
[TBL] [Abstract][Full Text] [Related]
19. Time-resolved Raman and polyacrylamide gel electrophoresis observations of nucleotide incorporation and misincorporation in RNA within a bacterial RNA polymerase crystal.
Antonopoulos IH; Murayama Y; Warner BA; Sekine S; Yokoyama S; Carey PR
Biochemistry; 2015 Jan; 54(3):652-65. PubMed ID: 25584498
[TBL] [Abstract][Full Text] [Related]
20. Conserved functions of the trigger loop and Gre factors in RNA cleavage by bacterial RNA polymerases.
Miropolskaya N; Esyunina D; Kulbachinskiy A
J Biol Chem; 2017 Apr; 292(16):6744-6752. PubMed ID: 28242762
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
