These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
206 related articles for article (PubMed ID: 25551450)
1. Binpairs: utilization of Illumina paired-end information for improving efficiency of taxonomic binning of metagenomic sequences. Dutta A; Tandon D; Mohammed MH; Bose T; Mande SS PLoS One; 2014; 9(12):e114814. PubMed ID: 25551450 [TBL] [Abstract][Full Text] [Related]
2. SPHINX--an algorithm for taxonomic binning of metagenomic sequences. Mohammed MH; Ghosh TS; Singh NK; Mande SS Bioinformatics; 2011 Jan; 27(1):22-30. PubMed ID: 21030462 [TBL] [Abstract][Full Text] [Related]
3. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge. Lu YY; Chen T; Fuhrman JA; Sun F Bioinformatics; 2017 Mar; 33(6):791-798. PubMed ID: 27256312 [TBL] [Abstract][Full Text] [Related]
4. TWARIT: an extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences. Reddy RM; Mohammed MH; Mande SS Gene; 2012 Sep; 505(2):259-65. PubMed ID: 22710135 [TBL] [Abstract][Full Text] [Related]
5. DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences. Ghosh TS; Monzoorul Haque M; Mande SS BMC Bioinformatics; 2010 Oct; 11 Suppl 7(Suppl 7):S14. PubMed ID: 21106121 [TBL] [Abstract][Full Text] [Related]
6. SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. Monzoorul Haque M; Ghosh TS; Komanduri D; Mande SS Bioinformatics; 2009 Jul; 25(14):1722-30. PubMed ID: 19439565 [TBL] [Abstract][Full Text] [Related]
7. AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides. Darabi A; Sobhani S; Aghdam R; Eslahchi C BMC Bioinformatics; 2024 Jul; 25(1):241. PubMed ID: 39014300 [TBL] [Abstract][Full Text] [Related]
8. Classification of metagenomic sequences: methods and challenges. Mande SS; Mohammed MH; Ghosh TS Brief Bioinform; 2012 Nov; 13(6):669-81. PubMed ID: 22962338 [TBL] [Abstract][Full Text] [Related]
9. MBMC: An Effective Markov Chain Approach for Binning Metagenomic Reads from Environmental Shotgun Sequencing Projects. Wang Y; Hu H; Li X OMICS; 2016 Aug; 20(8):470-9. PubMed ID: 27447888 [TBL] [Abstract][Full Text] [Related]
10. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures. Girotto S; Pizzi C; Comin M Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676 [TBL] [Abstract][Full Text] [Related]
11. MetaCAA: A clustering-aided methodology for efficient assembly of metagenomic datasets. Reddy RM; Mohammed MH; Mande SS Genomics; 2014; 103(2-3):161-8. PubMed ID: 24607570 [TBL] [Abstract][Full Text] [Related]
12. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets. Bose T; Haque MM; Reddy C; Mande SS PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344 [TBL] [Abstract][Full Text] [Related]
13. RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets. Scheuch M; Höper D; Beer M BMC Bioinformatics; 2015 Mar; 16(1):69. PubMed ID: 25886935 [TBL] [Abstract][Full Text] [Related]
14. SolidBin: improving metagenome binning with semi-supervised normalized cut. Wang Z; Wang Z; Lu YY; Sun F; Zhu S Bioinformatics; 2019 Nov; 35(21):4229-4238. PubMed ID: 30977806 [TBL] [Abstract][Full Text] [Related]
15. InteMAP: Integrated metagenomic assembly pipeline for NGS short reads. Lai B; Wang F; Wang X; Duan L; Zhu H BMC Bioinformatics; 2015 Aug; 16():244. PubMed ID: 26250558 [TBL] [Abstract][Full Text] [Related]
16. Joining Illumina paired-end reads for classifying phylogenetic marker sequences. Liu T; Chen CY; Chen-Deng A; Chen YL; Wang JY; Hou YI; Lin MC BMC Bioinformatics; 2020 Mar; 21(1):105. PubMed ID: 32171248 [TBL] [Abstract][Full Text] [Related]
17. Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity. Wang Y; Wang K; Lu YY; Sun F BMC Bioinformatics; 2017 Sep; 18(1):425. PubMed ID: 28931373 [TBL] [Abstract][Full Text] [Related]
19. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing. Pan W; Chen B; Xu Y Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485 [TBL] [Abstract][Full Text] [Related]
20. A sensitive short read homology search tool for paired-end read sequencing data. Techa-Angkoon P; Sun Y; Lei J BMC Bioinformatics; 2017 Oct; 18(Suppl 12):414. PubMed ID: 29072140 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]