These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

202 related articles for article (PubMed ID: 25554123)

  • 21. Temperature-dependent protein dynamics: a simulation-based probabilistic diffusion-vibration Langevin description.
    Moritsugu K; Smith JC
    J Phys Chem B; 2006 Mar; 110(11):5807-16. PubMed ID: 16539528
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Assessment of the Sampling Performance of Multiple-Copy Dynamics versus a Unique Trajectory.
    Perez JJ; Tomas MS; Rubio-Martinez J
    J Chem Inf Model; 2016 Oct; 56(10):1950-1962. PubMed ID: 27599150
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Structure and energy landscape of a photoswitchable peptide: a replica exchange molecular dynamics study.
    Nguyen PH; Mu Y; Stock G
    Proteins; 2005 Aug; 60(3):485-94. PubMed ID: 15977160
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Conformation spaces of proteins.
    Sullivan DC; Kuntz ID
    Proteins; 2001 Mar; 42(4):495-511. PubMed ID: 11170204
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Peptide folding dynamics: a time-resolved study from the nanosecond to the microsecond time regime.
    Venanzi M; Gatto E; Bocchinfuso G; Palleschi A; Stella L; Baldini C; Formaggio F; Toniolo C
    J Phys Chem B; 2006 Nov; 110(45):22834-41. PubMed ID: 17092035
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Enhanced sampling of molecular dynamics simulation of peptides and proteins by double coupling to thermal bath.
    Chen C; Huang Y; Xiao Y
    J Biomol Struct Dyn; 2013; 31(2):206-14. PubMed ID: 22830440
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Properties of low-dimensional collective variables in the molecular dynamics of biopolymers.
    Meloni R; Camilloni C; Tiana G
    Phys Rev E; 2016 Nov; 94(5-1):052406. PubMed ID: 27967023
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Predicting the Thermodynamics and Kinetics of Helix Formation in a Cyclic Peptide Model.
    Damas JM; Filipe LC; Campos SR; Lousa D; Victor BL; Baptista AM; Soares CM
    J Chem Theory Comput; 2013 Nov; 9(11):5148-57. PubMed ID: 26583424
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Infrared signatures of the peptide dynamical transition: a molecular dynamics simulation study.
    Kobus M; Nguyen PH; Stock G
    J Chem Phys; 2010 Jul; 133(3):034512. PubMed ID: 20649342
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Conformational dynamics of cytochrome c: correlation to hydrogen exchange.
    García AE; Hummer G
    Proteins; 1999 Aug; 36(2):175-91. PubMed ID: 10398365
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Recovering position-dependent diffusion from biased molecular dynamics simulations.
    Ljubetič A; Urbančič I; Štrancar J
    J Chem Phys; 2014 Feb; 140(8):084109. PubMed ID: 24588150
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Dynamic neutron scattering from conformational dynamics. II. Application using molecular dynamics simulation and Markov modeling.
    Yi Z; Lindner B; Prinz JH; Noé F; Smith JC
    J Chem Phys; 2013 Nov; 139(17):175102. PubMed ID: 24206335
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Coarse-Grained Langevin Equation for Protein Dynamics: Global Anisotropy and a Mode Approach to Local Complexity.
    Copperman J; Guenza MG
    J Phys Chem B; 2015 Jul; 119(29):9195-211. PubMed ID: 25356856
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Unfolding the conformational behavior of peptide dendrimers: insights from molecular dynamics simulations.
    Filipe LC; Machuqueiro M; Baptista AM
    J Am Chem Soc; 2011 Apr; 133(13):5042-52. PubMed ID: 21405018
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Thermodynamic and kinetic characterization of a beta-hairpin peptide in solution: an extended phase space sampling by molecular dynamics simulations in explicit water.
    Daidone I; Amadei A; Di Nola A
    Proteins; 2005 May; 59(3):510-8. PubMed ID: 15789436
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Assessing equilibration and convergence in biomolecular simulations.
    Smith LJ; Daura X; van Gunsteren WF
    Proteins; 2002 Aug; 48(3):487-96. PubMed ID: 12112673
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Fluctuation power spectra reveal dynamical heterogeneity of peptides.
    Khatri B; Yew ZT; Krivov S; McLeish T; Paci E
    J Chem Phys; 2010 Jul; 133(1):015101. PubMed ID: 20614985
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A targeted reweighting method for accelerating the exploration of high-dimensional configuration space.
    Cukier RI; Morillo M
    J Chem Phys; 2005 Dec; 123(23):234908. PubMed ID: 16392950
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.