BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

2498 related articles for article (PubMed ID: 25559105)

  • 1. ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
    Buenrostro JD; Wu B; Chang HY; Greenleaf WJ
    Curr Protoc Mol Biol; 2015 Jan; 109():21.29.1-21.29.9. PubMed ID: 25559105
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
    Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
    Elife; 2020 Nov; 9():. PubMed ID: 33191916
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Detect accessible chromatin using ATAC-sequencing, from principle to applications.
    Sun Y; Miao N; Sun T
    Hereditas; 2019; 156():29. PubMed ID: 31427911
    [TBL] [Abstract][Full Text] [Related]  

  • 4. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
    Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
    Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assay for Transposase-Accessible Chromatin with High-Throughput Sequencing (ATAC-Seq) Protocol for Zebrafish Embryos.
    Doganli C; Sandoval M; Thomas S; Hart D
    Methods Mol Biol; 2017; 1507():59-66. PubMed ID: 27832532
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Measuring Chromatin Accessibility: ATAC-Seq.
    Sahu SK; Basu A; Tiwari VK
    Methods Mol Biol; 2021; 2351():105-121. PubMed ID: 34382186
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protocol for assaying chromatin accessibility using ATAC-seq in plants.
    Wang FX; Shang GD; Wu LY; Mai YX; Gao J; Xu ZG; Wang JW
    STAR Protoc; 2021 Mar; 2(1):100289. PubMed ID: 33532736
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
    Bajic M; Maher KA; Deal RB
    Methods Mol Biol; 2018; 1675():183-201. PubMed ID: 29052193
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Epigenetic Application of ATAC-Seq Based on Tn5 Transposase Purification Technology.
    Li W; Tim Wu U; Cheng Y; Huang Y; Mao L; Sun M; Qiu C; Zhou L; Gao L
    Genet Res (Camb); 2022; 2022():8429207. PubMed ID: 36062065
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
    Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
    J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
    Tatara M; Ikeda T; Namekawa SH; Maezawa S
    Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
    [TBL] [Abstract][Full Text] [Related]  

  • 12. [ATAC-seq and its applications in complex disease].
    Chen M; Zhang Z; Meng ZY; Zhang XJ
    Yi Chuan; 2020 Apr; 42(4):347-353. PubMed ID: 32312703
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-wide analysis of chromatin accessibility using ATAC-seq.
    Shashikant T; Ettensohn CA
    Methods Cell Biol; 2019; 151():219-235. PubMed ID: 30948010
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Assay for Transposase-Accessible Chromatin Using Sequencing (ATAC-seq) Data Analysis.
    Miskimen KLS; Chan ER; Haines JL
    Curr Protoc Hum Genet; 2017 Jan; 92():20.4.1-20.4.13. PubMed ID: 28075484
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Analytical Approaches for ATAC-seq Data Analysis.
    Smith JP; Sheffield NC
    Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DeNOPA: decoding nucleosome positions sensitively with sparse ATAC-seq data.
    Xu B; Li X; Gao X; Jia Y; Liu J; Li F; Zhang Z
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34875002
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ATAC-seq Optimization for Cancer Epigenetics Research.
    Cooper M; Ray A; Bhattacharya A; Dhasarathy A; Takaku M
    J Vis Exp; 2022 Jun; (184):. PubMed ID: 35848835
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing.
    Chen X; Shen Y; Draper W; Buenrostro JD; Litzenburger U; Cho SW; Satpathy AT; Carter AC; Ghosh RP; East-Seletsky A; Doudna JA; Greenleaf WJ; Liphardt JT; Chang HY
    Nat Methods; 2016 Dec; 13(12):1013-1020. PubMed ID: 27749837
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-wide MNase hypersensitivity assay unveils distinct classes of open chromatin associated with H3K27me3 and DNA methylation in Arabidopsis thaliana.
    Zhao H; Zhang W; Zhang T; Lin Y; Hu Y; Fang C; Jiang J
    Genome Biol; 2020 Feb; 21(1):24. PubMed ID: 32014062
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Exploring Chromatin Accessibility in Mouse Epiblast Stem Cells with ATAC-Seq.
    Salehin N; Santucci N; Osteil P; Tam PPL
    Methods Mol Biol; 2022; 2490():93-100. PubMed ID: 35486242
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 125.