These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

208 related articles for article (PubMed ID: 25563652)

  • 1. Plectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA.
    Matek C; Ouldridge TE; Doye JP; Louis AA
    Sci Rep; 2015 Jan; 5():7655. PubMed ID: 25563652
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Supercoiling induces denaturation bubbles in circular DNA.
    Jeon JH; Adamcik J; Dietler G; Metzler R
    Phys Rev Lett; 2010 Nov; 105(20):208101. PubMed ID: 21231267
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Supercoiling and local denaturation of plasmids with a minimalist DNA model.
    Trovato F; Tozzini V
    J Phys Chem B; 2008 Oct; 112(42):13197-200. PubMed ID: 18826184
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dynamical control of denaturation bubble nucleation in supercoiled DNA minicircles.
    Sicard F; Destainville N; Rousseau P; Tardin C; Manghi M
    Phys Rev E; 2020 Jan; 101(1-1):012403. PubMed ID: 32069623
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence.
    Vlijm R; Mashaghi A; Bernard S; Modesti M; Dekker C
    Nanoscale; 2015 Feb; 7(7):3205-16. PubMed ID: 25615283
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The interplay of supercoiling and thymine dimers in DNA.
    Lim W; Randisi F; Doye JPK; Louis AA
    Nucleic Acids Res; 2022 Mar; 50(5):2480-2492. PubMed ID: 35188542
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-Scale Conformational Transitions in Supercoiled DNA Revealed by Coarse-Grained Simulation.
    Krajina BA; Spakowitz AJ
    Biophys J; 2016 Oct; 111(7):1339-1349. PubMed ID: 27705758
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dynamics of DNA supercoils.
    van Loenhout MT; de Grunt MV; Dekker C
    Science; 2012 Oct; 338(6103):94-7. PubMed ID: 22983709
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Thermodynamics of writhe in DNA minicircles from molecular dynamics simulations.
    Mitchell JS; Harris SA
    Phys Rev Lett; 2013 Apr; 110(14):148105. PubMed ID: 25167042
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fast dynamics of supercoiled DNA revealed by single-molecule experiments.
    Crut A; Koster DA; Seidel R; Wiggins CH; Dekker NH
    Proc Natl Acad Sci U S A; 2007 Jul; 104(29):11957-62. PubMed ID: 17623785
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Denaturation of supercoiled DNA: a Monte Carlo study.
    Kundu S; Lahiri A; Thakur AR
    Biophys Chem; 1998 Dec; 75(3):177-86. PubMed ID: 9894337
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Behavior of supercoiled DNA.
    Strick TR; Allemand JF; Bensimon D; Croquette V
    Biophys J; 1998 Apr; 74(4):2016-28. PubMed ID: 9545060
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Intercalation-Based Single-Molecule Fluorescence Assay To Study DNA Supercoil Dynamics.
    Ganji M; Kim SH; van der Torre J; Abbondanzieri E; Dekker C
    Nano Lett; 2016 Jul; 16(7):4699-707. PubMed ID: 27356180
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Competing B-Z and helix-coil conformational transitions in supercoiled plasmid DNA.
    Aboul-ela F; Bowater RP; Lilley DM
    J Biol Chem; 1992 Jan; 267(3):1776-85. PubMed ID: 1730717
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Coarse-grained modelling of supercoiled RNA.
    Matek C; Šulc P; Randisi F; Doye JP; Louis AA
    J Chem Phys; 2015 Dec; 143(24):243122. PubMed ID: 26723607
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Multiplectoneme phase of double-stranded DNA under torsion.
    Emanuel M; Lanzani G; Schiessel H
    Phys Rev E Stat Nonlin Soft Matter Phys; 2013 Aug; 88(2):022706. PubMed ID: 24032863
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Energy required to pinch a DNA plectoneme.
    Barde C; Destainville N; Manghi M
    Phys Rev E; 2018 Mar; 97(3-1):032412. PubMed ID: 29776038
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Supercoiling and denaturation of DNA loops.
    Liverpool TB; Harris SA; Laughton CA
    Phys Rev Lett; 2008 Jun; 100(23):238103. PubMed ID: 18643548
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Determining DNA supercoiling enthalpy by isothermal titration calorimetry.
    Xu X; Zhi X; Leng F
    Biochimie; 2012 Dec; 94(12):2665-72. PubMed ID: 22940593
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting.
    Vlijm R; V D Torre J; Dekker C
    PLoS One; 2015; 10(10):e0141576. PubMed ID: 26513573
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.