BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

246 related articles for article (PubMed ID: 25564155)

  • 1. Nucleosome positioning and composition modulate in silico chromatin flexibility.
    Clauvelin N; Lo P; Kulaeva OI; Nizovtseva EV; Diaz-Montes J; Zola J; Parashar M; Studitsky VM; Olson WK
    J Phys Condens Matter; 2015 Feb; 27(6):064112. PubMed ID: 25564155
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Changing chromatin fiber conformation by nucleosome repositioning.
    Müller O; Kepper N; Schöpflin R; Ettig R; Rippe K; Wedemann G
    Biophys J; 2014 Nov; 107(9):2141-50. PubMed ID: 25418099
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The Dynamic Influence of Linker Histone Saturation within the Poly-Nucleosome Array.
    Woods DC; Rodríguez-Ropero F; Wereszczynski J
    J Mol Biol; 2021 May; 433(10):166902. PubMed ID: 33667509
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multiscale modeling of nucleosome dynamics.
    Sharma S; Ding F; Dokholyan NV
    Biophys J; 2007 Mar; 92(5):1457-70. PubMed ID: 17142268
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A critical role for linker DNA in higher-order folding of chromatin fibers.
    Brouwer T; Pham C; Kaczmarczyk A; de Voogd WJ; Botto M; Vizjak P; Mueller-Planitz F; van Noort J
    Nucleic Acids Res; 2021 Mar; 49(5):2537-2551. PubMed ID: 33589918
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structure-based analysis of DNA sequence patterns guiding nucleosome positioning in vitro.
    Cui F; Zhurkin VB
    J Biomol Struct Dyn; 2010 Jun; 27(6):821-41. PubMed ID: 20232936
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Regulation of chromatin folding by conformational variations of nucleosome linker DNA.
    Buckwalter JM; Norouzi D; Harutyunyan A; Zhurkin VB; Grigoryev SA
    Nucleic Acids Res; 2017 Sep; 45(16):9372-9387. PubMed ID: 28934465
    [TBL] [Abstract][Full Text] [Related]  

  • 8. HMGN1 and 2 remodel core and linker histone tail domains within chromatin.
    Murphy KJ; Cutter AR; Fang H; Postnikov YV; Bustin M; Hayes JJ
    Nucleic Acids Res; 2017 Sep; 45(17):9917-9930. PubMed ID: 28973435
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DNA sequence-dependent contributions of core histone tails to nucleosome stability: differential effects of acetylation and proteolytic tail removal.
    Widlund HR; Vitolo JM; Thiriet C; Hayes JJ
    Biochemistry; 2000 Apr; 39(13):3835-41. PubMed ID: 10736184
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Nucleosome spacing periodically modulates nucleosome chain folding and DNA topology in circular nucleosome arrays.
    Bass MV; Nikitina T; Norouzi D; Zhurkin VB; Grigoryev SA
    J Biol Chem; 2019 Mar; 294(11):4233-4246. PubMed ID: 30630950
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.
    Shaytan AK; Armeev GA; Goncearenco A; Zhurkin VB; Landsman D; Panchenko AR
    J Mol Biol; 2016 Jan; 428(1):221-237. PubMed ID: 26699921
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Breaths, Twists, and Turns of Atomistic Nucleosomes.
    Huertas J; Cojocaru V
    J Mol Biol; 2021 Mar; 433(6):166744. PubMed ID: 33309853
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Linker histone-dependent organization and dynamics of nucleosome entry/exit DNAs.
    Sivolob A; Prunell A
    J Mol Biol; 2003 Aug; 331(5):1025-40. PubMed ID: 12927539
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Chromatin ionic atmosphere analyzed by a mesoscale electrostatic approach.
    Gan HH; Schlick T
    Biophys J; 2010 Oct; 99(8):2587-96. PubMed ID: 20959100
    [TBL] [Abstract][Full Text] [Related]  

  • 15. In silico approaches reveal the potential for DNA sequence-dependent histone octamer affinity to influence chromatin structure in vivo.
    Fraser RM; Allan J; Simmen MW
    J Mol Biol; 2006 Dec; 364(4):582-98. PubMed ID: 17027853
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Linker DNA Length is a Key to Tri-nucleosome Folding.
    Kenzaki H; Takada S
    J Mol Biol; 2021 Mar; 433(6):166792. PubMed ID: 33383034
    [TBL] [Abstract][Full Text] [Related]  

  • 17. spFRET reveals changes in nucleosome breathing by neighboring nucleosomes.
    Buning R; Kropff W; Martens K; van Noort J
    J Phys Condens Matter; 2015 Feb; 27(6):064103. PubMed ID: 25564102
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Nucleosome positioning in relation to nucleosome spacing and DNA sequence-specific binding of a protein.
    Pusarla RH; Vinayachandran V; Bhargava P
    FEBS J; 2007 May; 274(9):2396-410. PubMed ID: 17419736
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Beyond the Nucleosome: Nucleosome-Protein Interactions and Higher Order Chromatin Structure.
    Lobbia VR; Trueba Sanchez MC; van Ingen H
    J Mol Biol; 2021 Mar; 433(6):166827. PubMed ID: 33460684
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning.
    Tolstorukov MY; Colasanti AV; McCandlish DM; Olson WK; Zhurkin VB
    J Mol Biol; 2007 Aug; 371(3):725-38. PubMed ID: 17585938
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.