161 related articles for article (PubMed ID: 25565150)
1. Fast flux module detection using matroid theory.
Reimers AC; Bruggeman FJ; Olivier BG; Stougie L
J Comput Biol; 2015 May; 22(5):414-24. PubMed ID: 25565150
[TBL] [Abstract][Full Text] [Related]
2. Hierarchical decomposition of metabolic networks using k-modules.
Reimers AC
Biochem Soc Trans; 2015 Dec; 43(6):1146-50. PubMed ID: 26614652
[TBL] [Abstract][Full Text] [Related]
3. Characterizing the optimal flux space of genome-scale metabolic reconstructions through modified latin-hypercube sampling.
Chaudhary N; Tøndel K; Bhatnagar R; dos Santos VA; Puchałka J
Mol Biosyst; 2016 Mar; 12(3):994-1005. PubMed ID: 26818782
[TBL] [Abstract][Full Text] [Related]
4. Flux modules in metabolic networks.
Müller AC; Bockmayr A
J Math Biol; 2014 Nov; 69(5):1151-79. PubMed ID: 24141488
[TBL] [Abstract][Full Text] [Related]
5. Decomposing flux distributions into elementary flux modes in genome-scale metabolic networks.
Chan SH; Ji P
Bioinformatics; 2011 Aug; 27(16):2256-62. PubMed ID: 21685054
[TBL] [Abstract][Full Text] [Related]
6. A hybrid model of anaerobic E. coli GJT001: combination of elementary flux modes and cybernetic variables.
Kim JI; Varner JD; Ramkrishna D
Biotechnol Prog; 2008; 24(5):993-1006. PubMed ID: 19194908
[TBL] [Abstract][Full Text] [Related]
7. SSDesign: Computational metabolic pathway design based on flux variability using elementary flux modes.
Toya Y; Shiraki T; Shimizu H
Biotechnol Bioeng; 2015 Apr; 112(4):759-68. PubMed ID: 25408191
[TBL] [Abstract][Full Text] [Related]
8. Computing the shortest elementary flux modes in genome-scale metabolic networks.
de Figueiredo LF; Podhorski A; Rubio A; Kaleta C; Beasley JE; Schuster S; Planes FJ
Bioinformatics; 2009 Dec; 25(23):3158-65. PubMed ID: 19793869
[TBL] [Abstract][Full Text] [Related]
9. Modeling the metabolic dynamics at the genome-scale by optimized yield analysis.
Luo H; Li P; Ji B; Nielsen J
Metab Eng; 2023 Jan; 75():119-130. PubMed ID: 36503050
[TBL] [Abstract][Full Text] [Related]
10. Fast thermodynamically constrained flux variability analysis.
Müller AC; Bockmayr A
Bioinformatics; 2013 Apr; 29(7):903-9. PubMed ID: 23390138
[TBL] [Abstract][Full Text] [Related]
11. Analysis of complex metabolic behavior through pathway decomposition.
Ip K; Colijn C; Lun DS
BMC Syst Biol; 2011 Jun; 5():91. PubMed ID: 21639889
[TBL] [Abstract][Full Text] [Related]
12. NetRed, an algorithm to reduce genome-scale metabolic networks and facilitate the analysis of flux predictions.
Lugar DJ; Mack SG; Sriram G
Metab Eng; 2021 May; 65():207-222. PubMed ID: 33161143
[TBL] [Abstract][Full Text] [Related]
13. A mathematical framework for yield (vs. rate) optimization in constraint-based modeling and applications in metabolic engineering.
Klamt S; Müller S; Regensburger G; Zanghellini J
Metab Eng; 2018 May; 47():153-169. PubMed ID: 29427605
[TBL] [Abstract][Full Text] [Related]
14. Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism.
Tabe-Bordbar S; Marashi SA
Biotechnol Lett; 2013 Dec; 35(12):2039-44. PubMed ID: 24078125
[TBL] [Abstract][Full Text] [Related]
15. A graph-based approach to analyze flux-balanced pathways in metabolic networks.
Arabzadeh M; Saheb Zamani M; Sedighi M; Marashi SA
Biosystems; 2018 Mar; 165():40-51. PubMed ID: 29337084
[TBL] [Abstract][Full Text] [Related]
16. Metabolic states with maximal specific rate carry flux through an elementary flux mode.
Wortel MT; Peters H; Hulshof J; Teusink B; Bruggeman FJ
FEBS J; 2014 Mar; 281(6):1547-55. PubMed ID: 24460934
[TBL] [Abstract][Full Text] [Related]
17. Maximum entropy decomposition of flux distribution at steady state to elementary modes.
Zhao Q; Kurata H
J Biosci Bioeng; 2009 Jan; 107(1):84-9. PubMed ID: 19147116
[TBL] [Abstract][Full Text] [Related]
18. Flux analysis and metabolomics for systematic metabolic engineering of microorganisms.
Toya Y; Shimizu H
Biotechnol Adv; 2013 Nov; 31(6):818-26. PubMed ID: 23680193
[TBL] [Abstract][Full Text] [Related]
19. Advances in network-based metabolic pathway analysis and gene expression data integration.
Rezola A; Pey J; Tobalina L; Rubio Á; Beasley JE; Planes FJ
Brief Bioinform; 2015 Mar; 16(2):265-79. PubMed ID: 24626528
[TBL] [Abstract][Full Text] [Related]
20. regEfmtool: speeding up elementary flux mode calculation using transcriptional regulatory rules in the form of three-state logic.
Jungreuthmayer C; Ruckerbauer DE; Zanghellini J
Biosystems; 2013 Jul; 113(1):37-9. PubMed ID: 23664840
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
