These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
331 related articles for article (PubMed ID: 25568283)
21. Inference of tumor phylogenies with improved somatic mutation discovery. Salari R; Saleh SS; Kashef-Haghighi D; Khavari D; Newburger DE; West RB; Sidow A; Batzoglou S J Comput Biol; 2013 Nov; 20(11):933-44. PubMed ID: 24195709 [TBL] [Abstract][Full Text] [Related]
22. Genomic complexity and dynamics of clonal evolution in childhood acute myeloid leukemia studied with whole-exome sequencing. Masetti R; Castelli I; Astolfi A; Bertuccio SN; Indio V; Togni M; Belotti T; Serravalle S; Tarantino G; Zecca M; Pigazzi M; Basso G; Pession A; Locatelli F Oncotarget; 2016 Aug; 7(35):56746-56757. PubMed ID: 27462774 [TBL] [Abstract][Full Text] [Related]
23. Inferring the paths of somatic evolution in cancer. Misra N; Szczurek E; Vingron M Bioinformatics; 2014 Sep; 30(17):2456-63. PubMed ID: 24812340 [TBL] [Abstract][Full Text] [Related]
24. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations. Fu X; Lei H; Tao Y; Schwartz R Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777 [TBL] [Abstract][Full Text] [Related]
26. BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples. Toosi H; Moeini A; Hajirasouliha I BMC Bioinformatics; 2019 Jun; 20(Suppl 11):282. PubMed ID: 31167637 [TBL] [Abstract][Full Text] [Related]
27. CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data. Yu Z; Li A; Wang M BMC Med Genomics; 2017 Mar; 10(1):15. PubMed ID: 28298214 [TBL] [Abstract][Full Text] [Related]
28. Computational Approaches for the Investigation of Intra-tumor Heterogeneity and Clonal Evolution from Bulk Sequencing Data in Precision Oncology Applications. Laganà A Adv Exp Med Biol; 2022; 1361():101-118. PubMed ID: 35230685 [TBL] [Abstract][Full Text] [Related]
29. Fast and scalable inference of multi-sample cancer lineages. Popic V; Salari R; Hajirasouliha I; Kashef-Haghighi D; West RB; Batzoglou S Genome Biol; 2015 May; 16(1):91. PubMed ID: 25944252 [TBL] [Abstract][Full Text] [Related]
30. Molecular pathogenesis of CLL and its evolution. Rodríguez D; Bretones G; Arango JR; Valdespino V; Campo E; Quesada V; López-Otín C Int J Hematol; 2015 Mar; 101(3):219-28. PubMed ID: 25630433 [TBL] [Abstract][Full Text] [Related]
31. ClonArch: visualizing the spatial clonal architecture of tumors. Wu J; El-Kebir M Bioinformatics; 2020 Jul; 36(Suppl_1):i161-i168. PubMed ID: 32657368 [TBL] [Abstract][Full Text] [Related]
33. Whole-exome sequencing reveals the spectrum of gene mutations and the clonal evolution patterns in paediatric acute myeloid leukaemia. Shiba N; Yoshida K; Shiraishi Y; Okuno Y; Yamato G; Hara Y; Nagata Y; Chiba K; Tanaka H; Terui K; Kato M; Park MJ; Ohki K; Shimada A; Takita J; Tomizawa D; Kudo K; Arakawa H; Adachi S; Taga T; Tawa A; Ito E; Horibe K; Sanada M; Miyano S; Ogawa S; Hayashi Y Br J Haematol; 2016 Nov; 175(3):476-489. PubMed ID: 27470916 [TBL] [Abstract][Full Text] [Related]
34. COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data. Sollier E; Kuipers J; Takahashi K; Beerenwinkel N; Jahn K Nat Commun; 2023 Aug; 14(1):4921. PubMed ID: 37582954 [TBL] [Abstract][Full Text] [Related]
35. Clonal evolution in chronic lymphocytic leukemia: impact of subclonality on disease progression. Sutton LA; Rosenquist R Expert Rev Hematol; 2015 Feb; 8(1):71-8. PubMed ID: 25345442 [TBL] [Abstract][Full Text] [Related]
36. SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution. Miller CA; White BS; Dees ND; Griffith M; Welch JS; Griffith OL; Vij R; Tomasson MH; Graubert TA; Walter MJ; Ellis MJ; Schierding W; DiPersio JF; Ley TJ; Mardis ER; Wilson RK; Ding L PLoS Comput Biol; 2014 Aug; 10(8):e1003665. PubMed ID: 25102416 [TBL] [Abstract][Full Text] [Related]
37. Predicting clone genotypes from tumor bulk sequencing of multiple samples. Miura S; Gomez K; Murillo O; Huuki LA; Vu T; Buturla T; Kumar S Bioinformatics; 2018 Dec; 34(23):4017-4026. PubMed ID: 29931046 [TBL] [Abstract][Full Text] [Related]
38. Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses. Ciccolella S; Ricketts C; Soto Gomez M; Patterson M; Silverbush D; Bonizzoni P; Hajirasouliha I; Della Vedova G Bioinformatics; 2021 Apr; 37(3):326-333. PubMed ID: 32805010 [TBL] [Abstract][Full Text] [Related]
39. Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments. Smith EN; Jepsen K; Khosroheidari M; Rassenti LZ; D'Antonio M; Ghia EM; Carson DA; Jamieson CH; Kipps TJ; Frazer KA Genome Biol; 2014 Aug; 15(8):420. PubMed ID: 25103687 [TBL] [Abstract][Full Text] [Related]
40. A divide-and-conquer method for scalable phylogenetic network inference from multilocus data. Zhu J; Liu X; Ogilvie HA; Nakhleh LK Bioinformatics; 2019 Jul; 35(14):i370-i378. PubMed ID: 31510688 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]